Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda14g01325 | ATGGCAAGAGAAAAGATTCAGATCAAGAAGATCGACAACCTGACGGCACGACAGGTGACCTTCTCTAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTGAGGAGCTTGCAGTTCTCTGCGATGCCGATGTTGGCCTTATTATCTTCTCCTCTACTGGAAAACTCTTCGAATACGCCAGCTCAAGTATGAAGGAAATTCTGGAGAGGCAAAATCTGCATTCTAAGAATCTGCGGAAGCTGGAGCAGCCATCGCTCGAGTTGCAGCTAGTGGAGAACAGCAACTACACGATGCTGAACAAGGAAATAGCAGATAGAAGCCATCAATTAAGGCAGATGAACTCACGGAAATCAAATCAAATTGTAAAACTTTGCAGAGCAAGTAGTCTCAGATTAACCCTTTTGATTTCTCTCAATTGGGTTGTGCAGGTGGAGATGGATAATGGAAGAAAGGACGTGAGAGAGGAGTCCGACAACGTGGTTGCAGAAGAGGGGCAGTCATCGGAATCAGTCACGAACGTCTGCAACTCCGGTGGGCCTCCCGTAGACGATGACAGTTCTGATACATCTCTCAAGTTGGGGTCAGTACAGTTGTCTTTTGACTTCACTCGTCGTTTTTGA | 615 | 46.02 | MAREKIQIKKIDNLTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYASSSMKEILERQNLHSKNLRKLEQPSLELQLVENSNYTMLNKEIADRSHQLRQMNSRKSNQIVKLCRASSLRLTLLISLNWVVQVEMDNGRKDVREESDNVVAEEGQSSESVTNVCNSGGPPVDDDSSDTSLKLGSVQLSFDFTRRF | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
14 | 14924973 | 14927029 | - | Bda028240.1 | Bda14g01325 | 21376 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda14g01325 | 204 | PANTHER | MADS-BOX PROTEIN SVP ISOFORM X1 | 142 | 194 | - | - | |
Bda14g01325 | 204 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 113 | - | - | |
Bda14g01325 | 204 | MobiDBLite | consensus disorder prediction | 161 | 188 | - | - | |
Bda14g01325 | 204 | SUPERFAMILY | SRF-like | 3 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | CDD | MADS_MEF2_like | 2 | 68 | IPR033896 | GO:0000977|GO:0045944 | |
Bda14g01325 | 204 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | PANTHER | MADS-BOX PROTEIN SVP ISOFORM X1 | 1 | 113 | - | - | |
Bda14g01325 | 204 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bda14g01325 | 204 | MobiDBLite | consensus disorder prediction | 151 | 188 | - | - | |
Bda14g01325 | 204 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 142 | 194 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda14g01325 | Bda-Chr14:14924973 | Bda15g00490 | Bda-Chr15:8043975 | 1.45E-32 | dispersed | |
Bda14g01325 | Bda-Chr14:14924973 | Bda13g01357 | Bda-Chr13:35968082 | 1.78E-66 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17119 | PF00319 | SRF-TF | 2.70E-24 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda14g01325 | - | - | oeu:111367513 | 244.588 |