Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01325 ATGGCAAGAGAAAAGATTCAGATCAAGAAGATCGACAACCTGACGGCACGACAGGTGACCTTCTCTAAGAGAAGAAGAGGGCTTTTTAAGAAAGCTGAGGAGCTTGCAGTTCTCTGCGATGCCGATGTTGGCCTTATTATCTTCTCCTCTACTGGAAAACTCTTCGAATACGCCAGCTCAAGTATGAAGGAAATTCTGGAGAGGCAAAATCTGCATTCTAAGAATCTGCGGAAGCTGGAGCAGCCATCGCTCGAGTTGCAGCTAGTGGAGAACAGCAACTACACGATGCTGAACAAGGAAATAGCAGATAGAAGCCATCAATTAAGGCAGATGAACTCACGGAAATCAAATCAAATTGTAAAACTTTGCAGAGCAAGTAGTCTCAGATTAACCCTTTTGATTTCTCTCAATTGGGTTGTGCAGGTGGAGATGGATAATGGAAGAAAGGACGTGAGAGAGGAGTCCGACAACGTGGTTGCAGAAGAGGGGCAGTCATCGGAATCAGTCACGAACGTCTGCAACTCCGGTGGGCCTCCCGTAGACGATGACAGTTCTGATACATCTCTCAAGTTGGGGTCAGTACAGTTGTCTTTTGACTTCACTCGTCGTTTTTGA 615 46.02 MAREKIQIKKIDNLTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYASSSMKEILERQNLHSKNLRKLEQPSLELQLVENSNYTMLNKEIADRSHQLRQMNSRKSNQIVKLCRASSLRLTLLISLNWVVQVEMDNGRKDVREESDNVVAEEGQSSESVTNVCNSGGPPVDDDSSDTSLKLGSVQLSFDFTRRF 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 14924973 14927029 - Bda028240.1 Bda14g01325 21376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01325 204 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 142 194 - -
Bda14g01325 204 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bda14g01325 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 113 - -
Bda14g01325 204 MobiDBLite consensus disorder prediction 161 188 - -
Bda14g01325 204 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Bda14g01325 204 CDD MADS_MEF2_like 2 68 IPR033896 GO:0000977|GO:0045944
Bda14g01325 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 113 - -
Bda14g01325 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda14g01325 204 MobiDBLite consensus disorder prediction 151 188 - -
Bda14g01325 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 142 194 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g01325 Bda-Chr14:14924973 Bda15g00490 Bda-Chr15:8043975 1.45E-32 dispersed
Bda14g01325 Bda-Chr14:14924973 Bda13g01357 Bda-Chr13:35968082 1.78E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17119 PF00319 SRF-TF 2.70E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01325 - - oeu:111367513 244.588