Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01353 ATGGCATCATCTTCTCTATCAGGACCATCGAAGAGGCAGCGAGGAGCTGCAAACGGGTCTCAGCAGGTGCAGTGCTTGGTCGACGGGTGTAAATCAGACCTTAGCAACTGCAGAGATTACCACCGGCGGCACAAGGTTTGTGAGCTTCATGCAAAGACTGCACAAGTTATAATTCGTGGCATGAACCAGAGATTCTGTCAGCAATGTAGCAGATTTCATTCACTGGAGGAGTTTGACGAGGGGAAGAGAAGTTGCCGGAAGCGCCTTGACGGACATAACAGAAGACGAAGAAAGCCACAGTCGGAGCCACTCCGGGCAGAACCTCACGCAAGTATTTTGTGTAGTTACCAAGGTTCTGGTTTACTAACATTCCAAGGGGAACTGAGTATCAAGGCTGAGGCAGATTCCAGGTTTCTTGATCAATATCATCGCGTAAATTCCTTCCATAAACAATTCCCTTTTGATGAATCTTCCACATCTACTGGAAGAGGCTGTGAAGGAGGAGAATCTGTCGATCCCCGTCCACTTCTTCCACCACCCGTGGCTTTCCCTGTGAACGGCGATTGTGCTCTCTCTCTTCTGTCATCACCCACAACACTGCCATCTCCGATCAATCCGAGCCGCTTTGCACAGCCAGCTCTGCAACATCCTTCACGCTACTTGAGTCTGCAGCCTGTTCCCGTGGATTCAGATCAGCCTCCCACTTTCAAGAATGATGAGTTCAACTCCCCATCATTTCCTTCTCTTTGGGATCAGTAA 759 49.41 MASSSLSGPSKRQRGAANGSQQVQCLVDGCKSDLSNCRDYHRRHKVCELHAKTAQVIIRGMNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQSEPLRAEPHASILCSYQGSGLLTFQGELSIKAEADSRFLDQYHRVNSFHKQFPFDESSTSTGRGCEGGESVDPRPLLPPPVAFPVNGDCALSLLSSPTTLPSPINPSRFAQPALQHPSRYLSLQPVPVDSDQPPTFKNDEFNSPSFPSLWDQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15834627 15835820 + Bda011051.1 Bda14g01353 21404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01353 252 MobiDBLite consensus disorder prediction 228 252 - -
Bda14g01353 252 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 11 217 IPR044817 GO:0003677
Bda14g01353 252 Gene3D - 15 86 IPR036893 GO:0003677|GO:0005634
Bda14g01353 252 SUPERFAMILY SBT domain 23 103 IPR036893 GO:0003677|GO:0005634
Bda14g01353 252 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 11 217 - -
Bda14g01353 252 Pfam SBP domain 25 98 IPR004333 GO:0003677
Bda14g01353 252 MobiDBLite consensus disorder prediction 223 252 - -
Bda14g01353 252 MobiDBLite consensus disorder prediction 153 174 - -
Bda14g01353 252 ProSiteProfiles Zinc finger SBP-type profile. 22 99 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01353 - - - pvy:116106892 199.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g01353 Bda-Chr14:15834627 Bda15g00631 Bda-Chr15:9445757 7.86E-36 dispersed
Bda14g01353 Bda-Chr14:15834627 Bda15g00679 Bda-Chr15:10230752 4.09E-50 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda12g00119 . 163 983 SBP-box Gene Family AT2G47070 57.6 8.3e-252 866.7
Bda05g00421 . 65 681 SBP-box Gene Family AT2G47070 61.0 2.8e-207 718.8
Bda15g00631 BCT 113 262 SBP-box Gene Family AT1G69170 55.3 9.6e-37 151.4
Bda10g00945 . 122 257 SBP-box Gene Family AT1G27370 55.7 1.5e-37 154.1
Bda12g00119 . 3 983 SBP-box Gene Family AT3G60030 55.3 1.1e-280 963.0
Bda05g00421 . 65 681 SBP-box Gene Family AT3G60030 59.3 2.6e-194 676.0
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50570 65.9 4.1e-39 159.1
Bda14g01353 . 5 126 SBP-box Gene Family AT5G50670 65.9 4.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024505 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17121 PF03110 SBP 1.50E-30 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda14g01353 Bda_Chr14 FPKM 1.784198 2.188474 0.190265 0.517379 11.089203 12.232089 13.151247 0.0 0.0