Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda14g01353 | ATGGCATCATCTTCTCTATCAGGACCATCGAAGAGGCAGCGAGGAGCTGCAAACGGGTCTCAGCAGGTGCAGTGCTTGGTCGACGGGTGTAAATCAGACCTTAGCAACTGCAGAGATTACCACCGGCGGCACAAGGTTTGTGAGCTTCATGCAAAGACTGCACAAGTTATAATTCGTGGCATGAACCAGAGATTCTGTCAGCAATGTAGCAGATTTCATTCACTGGAGGAGTTTGACGAGGGGAAGAGAAGTTGCCGGAAGCGCCTTGACGGACATAACAGAAGACGAAGAAAGCCACAGTCGGAGCCACTCCGGGCAGAACCTCACGCAAGTATTTTGTGTAGTTACCAAGGTTCTGGTTTACTAACATTCCAAGGGGAACTGAGTATCAAGGCTGAGGCAGATTCCAGGTTTCTTGATCAATATCATCGCGTAAATTCCTTCCATAAACAATTCCCTTTTGATGAATCTTCCACATCTACTGGAAGAGGCTGTGAAGGAGGAGAATCTGTCGATCCCCGTCCACTTCTTCCACCACCCGTGGCTTTCCCTGTGAACGGCGATTGTGCTCTCTCTCTTCTGTCATCACCCACAACACTGCCATCTCCGATCAATCCGAGCCGCTTTGCACAGCCAGCTCTGCAACATCCTTCACGCTACTTGAGTCTGCAGCCTGTTCCCGTGGATTCAGATCAGCCTCCCACTTTCAAGAATGATGAGTTCAACTCCCCATCATTTCCTTCTCTTTGGGATCAGTAA | 759 | 49.41 | MASSSLSGPSKRQRGAANGSQQVQCLVDGCKSDLSNCRDYHRRHKVCELHAKTAQVIIRGMNQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQSEPLRAEPHASILCSYQGSGLLTFQGELSIKAEADSRFLDQYHRVNSFHKQFPFDESSTSTGRGCEGGESVDPRPLLPPPVAFPVNGDCALSLLSSPTTLPSPINPSRFAQPALQHPSRYLSLQPVPVDSDQPPTFKNDEFNSPSFPSLWDQ | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 15834627 | 15835820 | + | Bda011051.1 | Bda14g01353 | 21404 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda14g01353 | 252 | MobiDBLite | consensus disorder prediction | 228 | 252 | - | - | |
| Bda14g01353 | 252 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 11 | 217 | IPR044817 | GO:0003677 | |
| Bda14g01353 | 252 | Gene3D | - | 15 | 86 | IPR036893 | GO:0003677|GO:0005634 | |
| Bda14g01353 | 252 | SUPERFAMILY | SBT domain | 23 | 103 | IPR036893 | GO:0003677|GO:0005634 | |
| Bda14g01353 | 252 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED | 11 | 217 | - | - | |
| Bda14g01353 | 252 | Pfam | SBP domain | 25 | 98 | IPR004333 | GO:0003677 | |
| Bda14g01353 | 252 | MobiDBLite | consensus disorder prediction | 223 | 252 | - | - | |
| Bda14g01353 | 252 | MobiDBLite | consensus disorder prediction | 153 | 174 | - | - | |
| Bda14g01353 | 252 | ProSiteProfiles | Zinc finger SBP-type profile. | 22 | 99 | IPR004333 | GO:0003677 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g01353 | Bda-Chr14:15834627 | Bda15g00631 | Bda-Chr15:9445757 | 7.86E-36 | dispersed | |
| Bda14g01353 | Bda-Chr14:15834627 | Bda15g00679 | Bda-Chr15:10230752 | 4.09E-50 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17121 | PF03110 | SBP | 1.50E-30 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda14g01353 | - | - | pvy:116106892 | 199.134 |