Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01357 TTTGGCAAAAATCCAGAGACAGCAACCCCAAAAACCATCTCTACGCCCACCCAAATGGAGAGTAACCAACAAGCTCAATCTTCTTCATACCCGACAGCTCAGCCTCCTCCTCCCCCGTCTCAATTTCACCATCTTCTCCAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAGGAAATCGAACAGGTTAATGAGTTCAAGAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGAACTCTGCAGAAGAATGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGGGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCGAGTGGCGTACCGTACTATTACCCTCCTTTAGGGCAGTCGGCAGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATCCCACCGGAATGTACATGCAGCCGCCTTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCTGAAGATGGGACATATGGGAGTGGAGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGGTACTTGATTTGA 726 52.2 FGKNPETATPKTISTPTQMESNQQAQSSSYPTAQPPPPPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDEGGLEGVVGATASGVPYYYPPLGQSAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQRYLI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15854238 15854963 + Bda011055.1 Bda14g01357 21408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01357 241 MobiDBLite consensus disorder prediction 1 30 - -
Bda14g01357 241 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 21 237 - -
Bda14g01357 241 MobiDBLite consensus disorder prediction 1 42 - -
Bda14g01357 241 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 137 IPR003958 -
Bda14g01357 241 Gene3D Histone, subunit A 40 152 IPR009072 GO:0046982
Bda14g01357 241 SUPERFAMILY Histone-fold 23 146 IPR009072 GO:0046982
Bda14g01357 241 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 21 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01357 - - - csv:101213576 338.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00526 Bda-Chr8:5273937 Bda14g01357 Bda-Chr14:15854238 1.60E-30 dispersed
Bda13g00494 Bda-Chr13:5828638 Bda14g01357 Bda-Chr14:15854238 1.82E-08 dispersed
Bda14g01357 Bda-Chr14:15854238 Bda15g00051 Bda-Chr15:1980174 5.34E-64 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01357 . 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 83.2 1.8e-83 305.8
Bda15g00051 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 2.0e-50 196.1
Bda07g01249 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.9e-49 192.2
Bda07g01249 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 75.5 2.1e-52 202.6
Bda15g00051 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 2.6e-47 185.7
Bda14g01357 . 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.2e-41 166.0
Bda07g01249 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 1.1e-52 203.4
Bda15g00051 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.9 1.1e-50 196.8
Bda14g01357 . 53 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.9 1.8e-50 196.1
Bda14g01357 . 58 210 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 1.1e-36 150.2
Bda14g01357 . 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 76.3 1.5e-75 279.6
Bda15g00051 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.7e-47 185.3
Bda07g01249 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.3e-44 176.0
Bda15g00051 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 5.0e-63 237.7
Bda14g01357 . 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.2e-49 191.8
Bda07g01249 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.6e-48 189.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17122 PF00808 CBFD_NFYB_HMF 6.80E-18 CL0012 Bda TF