Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda14g01537 ATGGGGGCTCCAAAGCAGAAATGGACATTAGCAGAAGAGGCAGCTCTTAAAGCAGGAGTTGTTAAGCACGGAGCAGGGAAGTGGCGCACAATACTTAGAGATCCGGAATATAGTGGCATCTTATATTTGCGTTCCAATGTTGATCTTAAGGACAAGTGGCGAAATATGAGTGTTATGTTTAATGGATGGGGATCTCGAGAGAGAGCTAGGTTAGCAAAAAAACAACATGCCCCTAAAATGGACGACAGTTCCCTGACTCTTGATAATGGAACTCAAAGCGATGAAGGCACAGAAGATGTTGAGCTTCCTGGTAATTCCAGTGATTTGGTACAGATTGTTGGAGCAACGAGATCTGTTGTAAGATTAGACAATCTTGTAAGAGAAGCGATAACTGCATTGTCGGAGCCTGGCGGTTCTAATAAGACAACTATTGCCTCTTACATTGAGGATCAATATTGGGCACCTCCAAATTTCAAGAGGCTGCTATCAGCCAAACTCAAATTCATGACATCTAGCGGGAAACTTATCAAGGTTAAACGGAAGTACAGGGTTGCACCAGTTCAAGCATTTTCTGACAGAAAAAGACACTCCTCTGCATCCTTGTTGGAGGGACGGCAGAGGGTTCCTCCAATGGTTGATAATGATAATATGAGTTTTCCTCCAAGAGCTCAGGTTGATTTGGAGGTAGCCAAGCTGAGGAAAATGACTTATCAAGAGGCTGCTGCTGTTGCTGCTCAAGCAGTTGCTGAGGCAGAAGCAGCCATTGCAGAAGCAGAAGAAGCAGCAAGGGAGGCTGAGGTAGCTGAAGCAGATGCTGAAGTAGCACAGGCTTTCGCAGAAGCAGCAACAAAGACTTTGAAAGGAAGAAATGTGCCTAAGTATGTAGATATGGCCCGAGCTTGA 903 44.96 MGAPKQKWTLAEEAALKAGVVKHGAGKWRTILRDPEYSGILYLRSNVDLKDKWRNMSVMFNGWGSRERARLAKKQHAPKMDDSSLTLDNGTQSDEGTEDVELPGNSSDLVQIVGATRSVVRLDNLVREAITALSEPGGSNKTTIASYIEDQYWAPPNFKRLLSAKLKFMTSSGKLIKVKRKYRVAPVQAFSDRKRHSSASLLEGRQRVPPMVDNDNMSFPPRAQVDLEVAKLRKMTYQEAAAVAAQAVAEAEAAIAEAEEAAREAEVAEADAEVAQAFAEAATKTLKGRNVPKYVDMARA 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 26096950 26114356 + Bda011363.1 Bda14g01537 21588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda14g01537 300 SMART sant 4 59 IPR001005 -
Bda14g01537 300 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Bda14g01537 300 MobiDBLite consensus disorder prediction 82 100 - -
Bda14g01537 300 MobiDBLite consensus disorder prediction 71 104 - -
Bda14g01537 300 Coils Coil 241 275 - -
Bda14g01537 300 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Bda14g01537 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bda14g01537 300 SUPERFAMILY Winged helix DNA-binding domain 117 195 IPR036390 -
Bda14g01537 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bda14g01537 300 Gene3D - 115 197 IPR036388 -
Bda14g01537 300 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda14g01537 300 Pfam linker histone H1 and H5 family 123 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda14g01537 300 Gene3D - 8 85 - -
Bda14g01537 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bda14g01537 300 SUPERFAMILY Homeodomain-like 2 73 IPR009057 -
Bda14g01537 300 CDD SANT_TRF 6 56 - -
Bda14g01537 300 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda14g01537 K09422 MYBP; transcription factor MYB, plant - qsu:112034690 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00887 Bda-Chr2:49268284 Bda14g01537 Bda-Chr14:26096950 3.26E-06 dispersed
Bda06g01187 Bda-Chr6:41558356 Bda14g01537 Bda-Chr14:26096950 5.24E-104 dispersed
Bda14g01282 Bda-Chr14:13769064 Bda14g01537 Bda-Chr14:26096950 1.12E-70 dispersed
Bda14g01537 Bda-Chr14:26096950 Bda09g00204 Bda-Chr9:2907657 7.22E-06 dispersed
Bda14g01537 Bda-Chr14:26096950 Bda14g00987 Bda-Chr14:7994641 4.60E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01537 . 1 293 Single Myb Histone (SMH) Gene Family AT1G49950 62.0 5.1e-75 278.1
Bda06g01187 . 1 341 Single Myb Histone (SMH) Gene Family AT1G49950 56.2 2.4e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17130 PF00538 Linker_histone 2.80E-08 CL0123 Bda TF