Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00021 TTGGTAGCTTCGATGAGAAACGAGAAGGGCGGAGCTGGTTATCGTGGCCGGAAGAAATTCGGTGCACTTTTAGATTCGGATTCTCCTACTTCCTCTTGTGCTGAAATGGACGTTTATAATCAGCGTGAAAGCTCCGGCGAGTATTCCCCCGGCGGTATGTCCGGGGAAATTCTGGCGTATTATGATAATTCGCCGTCGCCGGCCAGAAGCGACAGCTCGCCGTATCCAATGTCGCCGTGGGATCAGCCATCTCCGTACACCAAATCGCCATGGATAGTACCACCGGCTTTAACTTATTTCGACGAGAATCTTTCTCGCAACGGCCTCATCGGGTCTTTGGTAAGAGAAGATGGCCACGTATACTCACTAGCCGTTTCCGGAAATTTGTTATACACTGGGTCCGAGAGCAAGAATATTCGGGTTTGGAAGAATTTGAAGGAATTTACTGGTTTCAAATCAAACAGTGGATTGGTAAAAGCTATTGTAGTCTGCGGCGACAGGATCTTTACGGGCCACCAAGATGGAAAGATCCGAGTATGGAAGCTTACGCCTTCTCCCAAGAATTCGACTAGTCATAAGCGGATCGGAAGCTTACCGTCATTCAAAGACTCCATCAAAAAATCGATGCGCCCAAAGAATTACGTTCAGGCCAGTCGCCACCGGAACGTTCTTCTAATAAAGCATTTCGACGCAGTTTCATGCATGAGCTTAAACAAAGAGCAAGGGCTTTTGTACTCAGGGTCGTGGGATAAATCAGTGAAGGTGTGGCGCATTGCCAATTGGGAATTCTTGGAGTCAATTGCTGCCCATGAAGACGCCGTGAATTCCATCGTTTCCGGTTTTGATAGTTTTCTTTTTACGGGATCTGCTGACGGCACGGTGAAGGTATGGCGGAGGGAGTTGCAGGGGAGAACGATGAAACATTTTTTAGTTCAGGTGTTGCTGAAGCAGGAGAGTGCCGTAACGTCATTGGCAGTGAACCGTTCATCGGCGGTGGTTTACTGCGGATCATCTGATGGGTTAGTGACTTTTTGGGAGGGAGAGAAGCTTTTTTCGAACGGGGGGACTCTTCGGGGGCACAAGTTAGCGGTTCTGTGCTTATCCACGGCGGGGAGCTTGGTTTTCAGTGGGTCCGCTGATAAGAATATCTGCGTGTGGAAGAGGGAAGAGGGAAGTGGTTCCCACACTTGCTTATCGGTTTTCACCGGCCACACAGGGCCGGTGAAATGCTTGGCCGTTGATGAAGATGAGTGGCGGGAACGTCCGGAGGAGAAAGGGGCAAAGATAGGTGATCGTCGGTGGGTGGTTTACAGCGGGAGCTTGGATAAGTCTGTCAAAGTATGGAGAATATCAGAGCAAGCACCGGAATTGGGTCGGCCGAGGTTTCCTTCCTCGCCGGGTATAATGGGTTAG 1413 49.96 LVASMRNEKGGAGYRGRKKFGALLDSDSPTSSCAEMDVYNQRESSGEYSPGGMSGEILAYYDNSPSPARSDSSPYPMSPWDQPSPYTKSPWIVPPALTYFDENLSRNGLIGSLVREDGHVYSLAVSGNLLYTGSESKNIRVWKNLKEFTGFKSNSGLVKAIVVCGDRIFTGHQDGKIRVWKLTPSPKNSTSHKRIGSLPSFKDSIKKSMRPKNYVQASRHRNVLLIKHFDAVSCMSLNKEQGLLYSGSWDKSVKVWRIANWEFLESIAAHEDAVNSIVSGFDSFLFTGSADGTVKVWRRELQGRTMKHFLVQVLLKQESAVTSLAVNRSSAVVYCGSSDGLVTFWEGEKLFSNGGTLRGHKLAVLCLSTAGSLVFSGSADKNICVWKREEGSGSHTCLSVFTGHTGPVKCLAVDEDEWRERPEEKGAKIGDRRWVVYSGSLDKSVKVWRISEQAPELGRPRFPSSPGIMG 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1547337 1548749 + Bda011773.1 Bda15g00021 21716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00021 470 Gene3D - 100 222 IPR015943 GO:0005515
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 346 IPR001680 GO:0005515
Bda15g00021 470 MobiDBLite consensus disorder prediction 59 80 - -
Bda15g00021 470 CDD WD40 117 449 - -
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 297 IPR001680 GO:0005515
Bda15g00021 470 Gene3D - 223 464 IPR015943 GO:0005515
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 258 - -
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 297 - -
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Bda15g00021 470 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 457 IPR045182 -
Bda15g00021 470 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Bda15g00021 470 PRINTS G protein beta WD-40 repeat signature 436 450 IPR020472 -
Bda15g00021 470 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Bda15g00021 470 SUPERFAMILY WD40 repeat-like 110 453 IPR036322 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 117 143 IPR001680 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 227 256 IPR001680 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 396 448 IPR001680 GO:0005515
Bda15g00021 470 Pfam WD domain, G-beta repeat 353 387 IPR001680 GO:0005515
Bda15g00021 470 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 15 457 - -
Bda15g00021 470 SMART WD40_4 144 181 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 307 346 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 394 449 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 260 298 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 350 387 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 106 143 IPR001680 GO:0005515
Bda15g00021 470 SMART WD40_4 219 257 IPR001680 GO:0005515
Bda15g00021 470 ProSiteProfiles Trp-Asp (WD) repeats profile. 357 396 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00021 - - - pvy:116140033 595.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g01024 Bda15g00021 CCT
Bda08g01318 Bda15g00021 CCT
Bda06g01024 Bda15g00021 ECH
Bda08g01318 Bda15g00021 ECH
Bda14g00532 Bda15g00021 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00010 Bda-Chr15:1166681 Bda15g00021 Bda-Chr15:1547337 0 dispersed
Bda15g00011 Bda-Chr15:1170225 Bda15g00021 Bda-Chr15:1547337 0 dispersed
Bda14g00532 Bda-Chr14:3851052 Bda15g00021 Bda-Chr15:1547337 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00021 Bda_Chr15 FPKM 15.816161 15.050869 20.956085 22.341042 15.290318 14.150822 15.960984 53.436897 50.439915