Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00024 ATGAAAGCAATGGAGAGCTTGGAGGATCTGATTGAGGAAGTTAAGGCTCGGACACTTTGGTGGGCTTTGTGTATTTTCGGCATGGCCTACTTTTTGACCCATACCAGTAAATCAATGTGGATGAACCTACCTATATCTATTTTATTTGTTTATGCTCTGCGTATTCTTTTCAATGAAGTTGAGTTTCGTTGGAAGGTGAGAGCAGTTCGTCCACAAACATACTTATCTCATTTGGAAAAGAAACAGCTATCTGTGAATGATTCCCGGCTTGTTTCTGCAACTTTACCCTCAAGATGGAAAAGAAAAATTGATTCGCCTATTGTGGAAGCAGCAATGAAAGATTTTATTGATAAAATATTAAAGGATTTTGTGGTAGACTTGTGGTATTCAGAGATAACCCTAGATACAGAATTCCCAGAACAAATACGGTCAATAATTATGGATGCTCTTGGTGAAGTCACCGGGAGAGTTAAAGAGATGAACCTCGTCGATTTGCTTATGAGGTATGATGCTCTTTGCCATTATTTAACAGTTAATGTGGACGATGCTGTGGATGACATTGTACGCCAGTTTAAAGGGGTTTCTGACGGATTGATACGCAAAGTTGTTGGTTCACCATCTCCTGCTTTTGATGCCTCTTCTTCAATTTGGGATCAAACATTACCCTTGAATCCAGATGACTTAAATCAACATATTTCTAGACACTATAGTGCAGACGGGGCTAATAGTTATTCTGATAATGAGGAAGATGGAAAAGATCAAAGCAATACTCGTGAAGATGTCAGTGGATGGCATTCAGATACTGAGTTGAACGCCAAAAGTTTTCCACCTAGGGTGGTCAAGCGGGTTGAAGAGAATCGAGGTGTACATTCAGATAAAGAACTCAATTCAGGGGTGAAATATGGGATTAGCCAGGAAGGGGTTTCAGTAACCTCATATGACTTGGAAGATGTTGGTGTACCGCCTGAGTGGACCCCACCTAATGTTAGTGTGCCTTTGCTGAATTTGGTCGATAAAATATTTCAGCTAAACAGAAGAGGCTGGATAAGAAGACAGGTCCTTTGGATATCAAAACAGATTCTTCAGTTAATAATGGAGGATGCCCTGGACGATTGGCTTTTGAGACAGATACATTGGCTTCGAAGAGATGATATCATAGCTGAAGGCATTCGATGGGTTCAAGATATTTTGTGGCCAGATGGGACTTTCTTTCTAAGATTGAGGGATGTTCAATGCGAAGGTGATGATACTCAACATGATAAAAGTTCGTTTCAAACTACAAGTCAACCTGGTGGGAGCAAGTTCTCTAAGCCGGGGTCCTTTGAGGAGCAGCTTGAGGCAGCTCGAAGAGCCAGCGCTGTCAAGAAATTGCTGTTTGGTGGAGCTCCTACGACCTTGGTGAGCTTGATAGGACACAAACAGTACAAACGTTGTGCAAAAGATATTTACTACTTTACCCAATCTACCGTCTGCGTGAGACAACTCAGAATACCAGACAATTTTGTGAGGAAGATCAGAGATGAGCTTTCTGCAGTTGCTACTCTTGCCGTTCCTGCTGGTCATGTGTGGCATGTAGGACTAAGAAAAGCAGATAACAAGTTTTGGTTCAGAGAAGGGTGGCAGGAATTTGTCGATCATTACTCGATACGTGTGGGTTACTTTCTGGTATTTAGATACGAAGGAAATTCTTCTTTTGTTGTTTATATATTCAATCTAAGTACGTCCGAAATAAATTATCAATCAGCTAATCTCAGTATCAGTCAACTGTCCAAGTATTACAGTCGAAATGCTGTATTTGAAGAAATAGAAGATGATGACTCAGTTGACATCGTGGGTTCTTCACTTCCAAACTTGAATTCGGAAAAAAATAAAGCATTTGTTGATGGTTCAGATCAACTGAGATCTATCAAAATTCATAGGCCTCTGGCACTGCAAAATTTGTTTAATGGATCGAAACTGAATTGCATAAATTGGTCTAACGATGGTAGCTTGGATCCAACTACAGCTGGCAGCAATTCAACGTCAGATTTTCGATCTACACAACGTAATACGGTTCCAGTTAGTATTGCAGAGCCAAAAAAGTTTATGGACAACGAAGAACGGCAGATTTTGGATGATGAAATGCAAAAACTTAATAAGAGTGGAAGAAAGAAGAGGAAAACAGATGGGAATGAGCTTGGACCATCTTCGCAAAATGAGGAGGAAGTAGAAATGCGCTATAAGTTTTACAAAAGTGCTTCTGCGAGAAAAAGGACGGTGACTACAGAAGAACGGGAAAGGGTTGTCAATGCATCCAAAGCTTTTGAGCCCGTTAATCCCTTCTGTCGAGTTGTTTTGAGACCTTCGTATCTATATCGAGGTTGTATAATGTACTTGCCGTCTTGCTTTGCTGAAAAGAACCTGAGTGGCATTTCAGGATTCATCAAACTTCAGATTTCTGACGGGAGGCAGTGGTCGGTTCGATGTCTTAATAAAGGAGGTAAAACGAAGTTGAGTCAAGGTTGGTACGAATTTTGCTTAGAAAATAATTTGGGTGAAGGAGATGTTTGTGTGTTTGAATTGATCAAGGCCAGAGAAATTGTGCTAAAAGTTACTTTGTTTCGAGTAGTTGAAGAAGCTCGATTCGCAAACCCGGCTCCATTGCAGAGCTTTGGTAAACTCGTTAGAAAATAA 2673 40.55 MKAMESLEDLIEEVKARTLWWALCIFGMAYFLTHTSKSMWMNLPISILFVYALRILFNEVEFRWKVRAVRPQTYLSHLEKKQLSVNDSRLVSATLPSRWKRKIDSPIVEAAMKDFIDKILKDFVVDLWYSEITLDTEFPEQIRSIIMDALGEVTGRVKEMNLVDLLMRYDALCHYLTVNVDDAVDDIVRQFKGVSDGLIRKVVGSPSPAFDASSSIWDQTLPLNPDDLNQHISRHYSADGANSYSDNEEDGKDQSNTREDVSGWHSDTELNAKSFPPRVVKRVEENRGVHSDKELNSGVKYGISQEGVSVTSYDLEDVGVPPEWTPPNVSVPLLNLVDKIFQLNRRGWIRRQVLWISKQILQLIMEDALDDWLLRQIHWLRRDDIIAEGIRWVQDILWPDGTFFLRLRDVQCEGDDTQHDKSSFQTTSQPGGSKFSKPGSFEEQLEAARRASAVKKLLFGGAPTTLVSLIGHKQYKRCAKDIYYFTQSTVCVRQLRIPDNFVRKIRDELSAVATLAVPAGHVWHVGLRKADNKFWFREGWQEFVDHYSIRVGYFLVFRYEGNSSFVVYIFNLSTSEINYQSANLSISQLSKYYSRNAVFEEIEDDDSVDIVGSSLPNLNSEKNKAFVDGSDQLRSIKIHRPLALQNLFNGSKLNCINWSNDGSLDPTTAGSNSTSDFRSTQRNTVPVSIAEPKKFMDNEERQILDDEMQKLNKSGRKKRKTDGNELGPSSQNEEEVEMRYKFYKSASARKRTVTTEERERVVNASKAFEPVNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGISGFIKLQISDGRQWSVRCLNKGGKTKLSQGWYEFCLENNLGEGDVCVFELIKAREIVLKVTLFRVVEEARFANPAPLQSFGKLVRK 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1644275 1656573 - Bda011778.2 Bda15g00024 21719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00024 890 MobiDBLite consensus disorder prediction 245 266 - -
Bda15g00024 890 Gene3D - 482 574 IPR015300 -
Bda15g00024 890 Pfam PXA domain 105 178 IPR003114 -
Bda15g00024 890 Gene3D - 752 872 IPR015300 -
Bda15g00024 890 MobiDBLite consensus disorder prediction 706 724 - -
Bda15g00024 890 MobiDBLite consensus disorder prediction 237 277 - -
Bda15g00024 890 MobiDBLite consensus disorder prediction 706 733 - -
Bda15g00024 890 MobiDBLite consensus disorder prediction 416 436 - -
Bda15g00024 890 ProSiteProfiles B3 DNA-binding domain profile. 480 573 IPR003340 GO:0003677
Bda15g00024 890 Pfam Sorting nexin C terminal 348 489 IPR013937 -
Bda15g00024 890 Pfam B3 DNA binding domain 778 868 IPR003340 GO:0003677
Bda15g00024 890 Pfam B3 DNA binding domain 493 571 IPR003340 GO:0003677
Bda15g00024 890 MobiDBLite consensus disorder prediction 421 435 - -
Bda15g00024 890 CDD B3_DNA 485 571 IPR003340 GO:0003677
Bda15g00024 890 ProSiteProfiles B3 DNA-binding domain profile. 775 870 IPR003340 GO:0003677
Bda15g00024 890 SUPERFAMILY DNA-binding pseudobarrel domain 485 572 IPR015300 -
Bda15g00024 890 PANTHER PX SERINE/THREONINE KINASE PXK 173 496 - -
Bda15g00024 890 SUPERFAMILY DNA-binding pseudobarrel domain 769 868 IPR015300 -
Bda15g00024 890 PANTHER PX SERINE/THREONINE KINASE PXK 6 168 - -
Bda15g00024 890 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 6 168 - -
Bda15g00024 890 PANTHER SORTING NEXIN CARBOXY-TERMINAL PROTEIN 173 496 - -
Bda15g00024 890 CDD B3_DNA 773 868 IPR003340 GO:0003677
Bda15g00024 890 SMART B3_2 775 870 IPR003340 GO:0003677
Bda15g00024 890 SMART B3_2 485 573 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00250 Bda-Chr1:26857802 Bda15g00024 Bda-Chr15:1644275 2.73E-09 transposed
Bda03g00232 Bda-Chr3:1794823 Bda15g00024 Bda-Chr15:1644275 5.00E-07 transposed
Bda04g00305 Bda-Chr4:46403515 Bda15g00024 Bda-Chr15:1644275 4.69E-06 transposed
Bda04g00866 Bda-Chr4:58465220 Bda15g00024 Bda-Chr15:1644275 1.09E-43 transposed
Bda10g00203 Bda-Chr10:6990181 Bda15g00024 Bda-Chr15:1644275 3.65E-06 transposed
Bda10g00218 Bda-Chr10:9864311 Bda15g00024 Bda-Chr15:1644275 1.78E-06 transposed
Bda14g00530 Bda-Chr14:3823437 Bda15g00024 Bda-Chr15:1644275 2.46E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17132 PF08628 Nexin_C 1.90E-31 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00024 - - mnt:21409635 481.87