Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00027 ATGGAACTCAAACAATCCGGCAACCCTCTTCCTTTCAAATTCAACGCCCACGCACCTGAATTCGTCCCCAAATCGCACTCCGAGATCCCCATCTCCAGCTTTTACTACCCATTTTTCAGCTTTCTCTCTGGTGCCTCCGTCGCACCTGACTTGTTTGCTGTCGGAAATCAAGAATCCACTTTCTTGATCCCTAACCAGTCTGTCTCGCACCATAACTGTTCGAAGAATGTCCTCACTGACGATGTTCGTCGAAAGATCATCAATCAGGTGGAGTACCTGTTCAGTGATATGAATCTGATTGCTAATGAATCTTTTGCAAAACAAGTGAATAAAGATCCTGAGGGTTACGTTCCAATATCTTTTGTCGCTTCGACTAAGAAAATCAAGTTCCTCAGCACCAACAACCACATGCTTGCGCAAGCATTACGATCGTCTTCAAAGCTCGTTGTTAGCGAAGATGGCAAGAAGATTAGACGAAAGCACCCATTAACTGATAAAGAAAAAGAAGAATTGCAGTCTCGTACTGTCGTTGCGGAGAATTTGCCTGAAGATCACTCTTATCAGAATCTGCAGAAGCTATTTAGTTCTGTTGGGAGTGTAAAGACGATTCGGATGTGTCATCCTCAGGATTCAAACTCTTCTCGCCCGAAAGGGGAATTTTATTGTATCGGTAACAAGCTCCATGCGCTCGTGGAGTACGAGTCGCTAGACGTAGCAGAGAGAGCGGTCGAGAAGTTAACCGATGAACGAAATTGGAGGAAAGGGCTTCGTGTAAGGCTGTTGCTTCGACTCTCGCCGAAGTCTGTTTTAAAAACCAGAAAGTCAGATTTTGATGGAATGTCTGATGATGATGATGCTCCATCCCCTGATTGTATGAAAGAGCCAATTCCAGAGATGGCCTCAAATAGGAATGCCGAAGAAAGATTGACGGGATCGAAGAAGGGATGGAGCCGGGGACATGGGAAGGGTAGAGGAAGATCTCAAAGCCACATTGGACAGGGTGTGGCAGCCGCAGCCGCAGCCGCAGCTGCAGCCCCAGCCCCATCTCCACAACCAATCGGCAGCACAATGCAGGTGGAAGTGAACCACTCCAAACACAATTCCAAGGGCCCTAGAATGCCAGATGGGACAAAGGGTTTCGCCATGGGAAGAGGGAAGTCGATAAGAACTGGACCCGCACCGGCTGAACCCGTGTTGGATCGATAA 1206 47.68 MELKQSGNPLPFKFNAHAPEFVPKSHSEIPISSFYYPFFSFLSGASVAPDLFAVGNQESTFLIPNQSVSHHNCSKNVLTDDVRRKIINQVEYLFSDMNLIANESFAKQVNKDPEGYVPISFVASTKKIKFLSTNNHMLAQALRSSSKLVVSEDGKKIRRKHPLTDKEKEELQSRTVVAENLPEDHSYQNLQKLFSSVGSVKTIRMCHPQDSNSSRPKGEFYCIGNKLHALVEYESLDVAERAVEKLTDERNWRKGLRVRLLLRLSPKSVLKTRKSDFDGMSDDDDAPSPDCMKEPIPEMASNRNAEERLTGSKKGWSRGHGKGRGRSQSHIGQGVAAAAAAAAAAPAPSPQPIGSTMQVEVNHSKHNSKGPRMPDGTKGFAMGRGKSIRTGPAPAEPVLDR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1680512 1682886 + Bda011781.1 Bda15g00027 21722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00027 401 SUPERFAMILY RNA-binding domain, RBD 158 261 IPR035979 GO:0003676
Bda15g00027 401 SMART la 80 160 IPR006630 -
Bda15g00027 401 PANTHER LA-RELATED PROTEIN 6C 8 390 - -
Bda15g00027 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 247 IPR000504 GO:0003723
Bda15g00027 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 263 IPR000504 GO:0003723
Bda15g00027 401 Pfam La domain 86 143 IPR006630 -
Bda15g00027 401 MobiDBLite consensus disorder prediction 273 291 - -
Bda15g00027 401 Gene3D - 165 266 IPR012677 -
Bda15g00027 401 Gene3D - 78 164 IPR036388 -
Bda15g00027 401 PANTHER LUPUS LA PROTEIN-RELATED 8 390 IPR045180 -
Bda15g00027 401 MobiDBLite consensus disorder prediction 273 401 - -
Bda15g00027 401 PRINTS Lupus La protein signature 168 184 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda15g00027 401 PRINTS Lupus La protein signature 89 106 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda15g00027 401 PRINTS Lupus La protein signature 115 130 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda15g00027 401 PRINTS Lupus La protein signature 146 159 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bda15g00027 401 ProSiteProfiles La-type HTH domain profile. 76 167 IPR006630 -
Bda15g00027 401 SUPERFAMILY Winged helix DNA-binding domain 78 163 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00027 K15191 LARP7; La-related protein 7 - fve:101311941 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02173 Bda-Chr1:57677593 Bda15g00027 Bda-Chr15:1680512 1.07E-58 dispersed
Bda13g01316 Bda-Chr13:35376238 Bda15g00027 Bda-Chr15:1680512 3.73E-09 dispersed
Bda15g00027 Bda-Chr15:1680512 Bda04g00164 Bda-Chr4:4719281 4.55E-10 dispersed
Bda15g00027 Bda-Chr15:1680512 Bda02g00092 Bda-Chr2:4495673 1.41E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00027 Bda_Chr15 FPKM 16.907724 19.382433 20.139938 18.423443 18.622871 20.658251 18.357084 14.651096 11.396154