Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00034 TCTCGCAGCTCACCTCCTTTCCTTCCGATGCTCTCTGCAATGGCTTTCTCTGCTACTTTTGCTACTCCTACCTTCTTTTCTGTGGCTTCACGGGAGACCAAAACAGCATCCCCGAAACGCTCTTTTAAACCCCCCAAAACCCTCTCTCCTTATCCGCCATTGACGACCACCAGTTCTAGCGCCGCACTTGCCCGGGCATATTCCTCTCTGCCTCTCAAGAAGGTTTTGGTTCCAATTGGGTTTGGTACTGAAGAGATGGAAGCTGTTATTGTGATTGATGTTTTGCGCCGAGCGGGAGCTACTGTGACTGTGGCGTCTGTGGAACAAGAGCTTGAAATTGAAGCTTCCGGGGGCATGAAACTGGTTGCAGATACTTCCATTACAAGCTGTTTTAATGAAATTTTTGATCTTGTGGCTTTGCCTGGAGGAATGCCTGGTTCTGTACGGTTGAGAGATTGTGAAATTTTGCGAAAAATCACATGCAAACAAGCCGAGGAAAAGAGGCTTTATGGAGCTATTTGTGCAGCGCCAGCAGTTACACTTTTGCCGTGGGGTCTTGTGAAGAAAAAGCAGACAACTTGCCACCCTGCATTCTTTGGCAAGCTGCCAACCTTCTGGGCTGTTAAATCAAACATCCAAGTTTCAGGGGAACTCACTACAAGCCGTGGTCCTGGAACTTCGTTCGAATTTGCACTAGCTTTAGTTGAGCAACTTTTTGGAGAGTCGATTGCCAAAGAAGTTGGAGAATTTCTTCTTATACAGGATAAAGATGAATTTCCCAGGAAAGAAGAGTTCAACAAAGTTGACTGGTCTGTTAACCACAATCCTCGAGTCTTAATTCCAGTTGCAAACGGCTCTCACGAGATTGAACTTGTTACTATTGTTGATGTCTTAAGACGTGCGAAGGTAGATGTTGTGATTGCTTCTGTCGAAAGATCCCTACAGATTTTGGCATCACAGCGCACAAAAATTGTTGCTGATAAATTGATCAGTGAAGCTGCACAGTCATTATATGATTTGATTATACTTCCGGGTGGAGCCATGGCAGATGATCGACTGAACAAATCTAGGATATTGAAAAAGATGCTCAAAGAACAATATTCTTCCAAGAGGTTATATGGAGGAGTCTGCTCTTCACAAACAGTCCTCCACAAACAGGGTCTGCTGAAGGATAAGAAGGCCGTTGCTCATCCATCAACGGTAACTGAGCCGGCCGAGGAAGTTGTCAATGGTACTAAAGTAATTATCGATGGTAATCTAATAACAAGCACGGGACTTGCTAATGCGACGTATTTTGCTCTGACAATTGTTGGCAAACTTTTTGGTCATGCACGGGCAAGAAGTGTAGCTGAAGGTCTTGTTTTCGAATATCCCAGAAATGGGTGA 1386 44.73 SRSSPPFLPMLSAMAFSATFATPTFFSVASRETKTASPKRSFKPPKTLSPYPPLTTTSSSAALARAYSSLPLKKVLVPIGFGTEEMEAVIVIDVLRRAGATVTVASVEQELEIEASGGMKLVADTSITSCFNEIFDLVALPGGMPGSVRLRDCEILRKITCKQAEEKRLYGAICAAPAVTLLPWGLVKKKQTTCHPAFFGKLPTFWAVKSNIQVSGELTTSRGPGTSFEFALALVEQLFGESIAKEVGEFLLIQDKDEFPRKEEFNKVDWSVNHNPRVLIPVANGSHEIELVTIVDVLRRAKVDVVIASVERSLQILASQRTKIVADKLISEAAQSLYDLIILPGGAMADDRLNKSRILKKMLKEQYSSKRLYGGVCSSQTVLHKQGLLKDKKAVAHPSTVTEPAEEVVNGTKVIIDGNLITSTGLANATYFALTIVGKLFGHARARSVAEGLVFEYPRNG 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1802036 1806059 + Bda011791.1 Bda15g00034 21729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00034 461 Pfam DJ-1/PfpI family 73 237 IPR002818 -
Bda15g00034 461 Pfam DJ-1/PfpI family 277 437 IPR002818 -
Bda15g00034 461 Gene3D - 67 263 IPR029062 -
Bda15g00034 461 Gene3D - 270 460 IPR029062 -
Bda15g00034 461 SUPERFAMILY Class I glutamine amidotransferase-like 277 460 IPR029062 -
Bda15g00034 461 CDD GATase1_DJ-1 75 238 - -
Bda15g00034 461 PANTHER PROTEIN DJ-1 HOMOLOG C 54 458 - -
Bda15g00034 461 SUPERFAMILY Class I glutamine amidotransferase-like 73 253 IPR029062 -
Bda15g00034 461 CDD GATase1_DJ-1 278 440 - -
Bda15g00034 461 TIGRFAM not_thiJ: DJ-1 family protein 74 248 IPR006287 -
Bda15g00034 461 TIGRFAM not_thiJ: DJ-1 family protein 277 451 IPR006287 -
Bda15g00034 461 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 54 458 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00034 - - - cmo:103495244 607.831
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g402 . . . . . Bpe12g00056 . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1088 . . . . . . . . Blo13g00575 Bda15g00034 . . . . . . . . Cma11g01744 . Car11g01096 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010954 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00034 Bda_Chr15 FPKM 5.773989 7.424812 8.833314 8.75174 7.558951 6.818665 8.222571 8.976982 8.637651