Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00040 ATGGCTCAGATTCAACCTCCGCCTCAAAATGTGATGCCCGGCGTCAATCAAGCTGCGATCGGTGGTCAGAACCAGTTTGTGACAACCTCGATGTATGTCGGAGATCTTGACGCGAATGTGACGGATTCGCAGCTATATGACCTGTTCAATCAGGTCGGTCAGGTGGTATCTGTTCGAGTCTGCAGGGATTTGTCTACTCGACGATCGCTCGGCTACGGTTATGTCAACTATAGCAACCCGCAAGATGGTGCAAGAGCATTGGACGTTCTAAACTTTACACCTATAAATGGAAAGCCCATCCGAGTAATGTATTCTCATCGTGACCCCAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATCAAGAATTTGGACAAGGCGATTGATCACAAAGCATTACAGGAGACATTTTCTGCATTTGGGAATGTAGTCTCCTGTAAGGTGGCCACAGACCAATTTGGTCAGTCAAAAGGCTATGGATTTGTTCAATTTGATAATGAGGAATCTGCTCAAAAAGCTATTGAGAAGTTGAATGGAATGTTATTGAATGACAAACAAGTCTTTGTTGGACCTTTCCTTCGTAAACAGGAAAGAGATGGATCTGTTGACAAATCTAAATTCAACAATGTATATCTAAAAAATATCTCTGATGGTACCACTGAAGAAGACCTGCAAAAGATATTTGGTGAATTCGGGCCCATCACTAGTGTTGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTATGTCCGTTGAGGCACTTAATGGAAAGAAGCTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAGTTGAATTAAAAAGTCAATTTGAACGTAATATGAAAGAGGCAGCTGACAAGTATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGACAGTATCAACGATGATATGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATTACTTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAGGGGATCTGGGTTTGTAGCATTCTCCTCTCCTGAAGAGGCTTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGATTGTGTCGAAACCTTTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAGGCTTAGGTTGCAGGCCCAATTTTCTCAGATGCAACCAGTAGCAATGCCACACTCTGTTGCTCCCCGAATGCCAATGTATCCACCTAGTGGTCCTGGTCTTGCCCAACAAATATTCTATAATCAGGCTCCGCCAGCTATAATTTCTTCACAGGCTGGCTACGGTTATCAGCAACAAATTGTTCCTGGCATTAGGCCTGGTGGGGCTTCGATGCCAAACTTTTTTGTACCCATGGTTCAACAGGGCCCGCAAGGACAACGCCCTGGTGGAAGACGATCTGCGGGTCTTCAGCAAACCCAGCAGCCTGTTCCGCTAATGCACCAGCAGATGGTACCAAGGGGGCGTCTGTACCGTTATCCTCCTGGACGGGGCCTGCCTGATGTTCCTATGCCTGGCATTGCTGGAGGCATGTTTTCTGTTCCATATGACATGAGTGGCATGCCACTGCGTGATGCAGCTATCTCTCAGCCTATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTTCTCCAGATCAGCAGAGAACAATGCTAGGGGAGAGTCTTTACCCACTTGTGGAGCAGCTTGAGCCTGAGAATGCCGCCAAAGTGACTGGCATGCTTCTTGAAATGGATCAGACGGAGGTTCTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCGAAAGTGGCAGAGGCTATGGAGGTTCTAAGAAATGTTGCTCAGCAGCAGGTTGGAAATGCAGCTGATCAGTTGGTCTCGTTGTCTCTCAACGACAACCTTGATTCCTGA 1950 45.49 MAQIQPPPQNVMPGVNQAAIGGQNQFVTTSMYVGDLDANVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVVSCKVATDQFGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDGSVDKSKFNNVYLKNISDGTTEEDLQKIFGEFGPITSVAVMRDEDGKSKCFGFVNFENPDDAAMSVEALNGKKLDGKEWYVGKAQKKSEREVELKSQFERNMKEAADKYQGANLYVKNLDDSINDDMLKELFSPFGTITSCKVMQDPNGISRGSGFVAFSSPEEASRALLEMNGKMIVSKPLYVAPAQRKEERRLRLQAQFSQMQPVAMPHSVAPRMPMYPPSGPGLAQQIFYNQAPPAIISSQAGYGYQQQIVPGIRPGGASMPNFFVPMVQQGPQGQRPGGRRSAGLQQTQQPVPLMHQQMVPRGRLYRYPPGRGLPDVPMPGIAGGMFSVPYDMSGMPLRDAAISQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQVGNAADQLVSLSLNDNLDS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1849466 1853931 - Bda011798.2 Bda15g00040 21735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00040 649 CDD RRM1_I_PABPs 30 109 - -
Bda15g00040 649 SMART poly_2 563 626 IPR002004 GO:0003723
Bda15g00040 649 PANTHER RNA BINDING PROTEIN 18 633 - -
Bda15g00040 649 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Bda15g00040 649 SUPERFAMILY PABC (PABP) domain 492 641 IPR036053 GO:0003723
Bda15g00040 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Bda15g00040 649 Gene3D - 294 398 IPR012677 -
Bda15g00040 649 Gene3D - 193 293 IPR012677 -
Bda15g00040 649 Gene3D - 22 118 IPR012677 -
Bda15g00040 649 PANTHER POLYADENYLATE-BINDING PROTEIN 18 633 - -
Bda15g00040 649 CDD RRM3_I_PABPs 207 286 - -
Bda15g00040 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bda15g00040 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bda15g00040 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bda15g00040 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bda15g00040 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Bda15g00040 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bda15g00040 649 SUPERFAMILY RNA-binding domain, RBD 208 390 IPR035979 GO:0003676
Bda15g00040 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 624 IPR006515 GO:0003723
Bda15g00040 649 CDD RRM4_I_PABPs 310 388 - -
Bda15g00040 649 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bda15g00040 649 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bda15g00040 649 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bda15g00040 649 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bda15g00040 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bda15g00040 649 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bda15g00040 649 Gene3D - 119 190 IPR012677 -
Bda15g00040 649 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bda15g00040 649 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bda15g00040 649 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bda15g00040 649 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bda15g00040 649 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bda15g00040 649 Gene3D - 547 630 - -
Bda15g00040 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda14g00509 Bda15g00040 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01608 Bda-Chr1:51929890 Bda15g00040 Bda-Chr15:1849466 0 dispersed
Bda08g01368 Bda-Chr8:54274549 Bda15g00040 Bda-Chr15:1849466 0 dispersed
Bda13g01695 Bda-Chr13:40322884 Bda15g00040 Bda-Chr15:1849466 5.44E-07 dispersed
Bda15g00040 Bda-Chr15:1849466 Bda07g00359 Bda-Chr7:4590208 1.84E-11 dispersed
Bda04g00028 Bda-Chr4:440430 Bda15g00040 Bda-Chr15:1849466 1.05E-09 transposed
Bda08g00044 Bda-Chr8:338505 Bda15g00040 Bda-Chr15:1849466 1.00E-06 transposed
Bda14g00509 Bda-Chr14:3707904 Bda15g00040 Bda-Chr15:1849466 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00040 K13126 - jre:108988866 1078.54