Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00079 ATGTCCAATTCTGAAGGGGGTAACAACGGCGTCGTCAACGGCGCTGTAATCGACTCTCAGAGACAACAGCCACCGAGCAATGGAGCGATTGTCGTCAAAAAGCCACCCTCCAAAGACCGCCACAGTAAAGTCGACGGTCGCGGTCGTCGTATCCGGATGCCGATCATTTGCGCCGCGCGGGTATTTCAGCTGACCAGGGAGCTTGGCCACAAGTCTGATGGTCAGACCATTGAGTGGCTTCTCCGGCAAGCCGAGCCTTCAATTATAGCTGCTACTGGAACCGGGACTACTCCTGCGAGCTTTTCTTCTGTCTCCGTTTCTGTCAGAGGTGGCGCCGGCTCGGGCTCCCTCTCTTCGTCTTCGACTTCTTCCTCTCTCTCCCTCTCTCGGCCGCAGGCCTTCTCCGGACCCACCCCTTTTATCCTGGGCAAGCGCGTAAGAACCGACGACGACGGAGGCGCTGCAGCTAAAGACGAAGGCGTATCCGTGGGTCCCACGGTGGGCTCCATAGTCGGTCCGGCCGCCGCCGGTGGCTACTGGGCCATTCCTGCTAGACCGGACTTTGGGCAGATATGGAGCTTCGCGGCAGCGACGGGAACGCCGGAATTGATTCAGCCGTCGTCGGTGGCTCAACAAGCTTCTTTGTTTATTCAGCAGCAGCAGCAGTCGATTGGGGAGGCTTCGGCGGCTAGGGTAGGGAATTACCTTCCGGGACATTTGAATTTACTAGCTTCATTATCAGGTGGACACGGCAATTCAGGTCGGAGAGAAGACGACCAACGT 783 57.73 MSNSEGGNNGVVNGAVIDSQRQQPPSNGAIVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSVRGGAGSGSLSSSSTSSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAAAKDEGVSVGPTVGSIVGPAAAGGYWAIPARPDFGQIWSFAAATGTPELIQPSSVAQQASLFIQQQQQSIGEASAARVGNYLPGHLNLLASLSGGHGNSGRREDDQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 2766786 2767568 - Bda033265 Bda15g00079 21774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00079 261 MobiDBLite consensus disorder prediction 34 49 - -
Bda15g00079 261 Pfam TCP family transcription factor 37 120 IPR017887 -
Bda15g00079 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
Bda15g00079 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bda15g00079 261 MobiDBLite consensus disorder prediction 1 27 - -
Bda15g00079 261 MobiDBLite consensus disorder prediction 112 132 - -
Bda15g00079 261 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Bda15g00079 261 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00079 K16221 TCP21, CHE; transcription factor TCP21 (protein CCA1 HIKING EXPEDITION) - cpap:110813909 329.331
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00462 Bda-Chr14:3323927 Bda15g00079 Bda-Chr15:2766786 5.67E-150 dispersed
Bda14g00488 Bda-Chr14:3543917 Bda15g00079 Bda-Chr15:2766786 5.67E-150 dispersed
Bda15g00079 Bda-Chr15:2766786 Bda14g00846 Bda-Chr14:6520571 4.92E-40 dispersed
Bda15g00075 Bda-Chr15:2600214 Bda15g00079 Bda-Chr15:2766786 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00079 . 35 261 TCP Transcription Factor Family AT5G23280 53.2 1.3e-52 203.4
Bda14g00462 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda14g00488 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.3e-52 203.4
Bda15g00075 . 35 260 TCP Transcription Factor Family AT5G23280 53.0 2.3e-52 202.6
Bda14g00846 CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 80.8 3.0e-40 163.3
Bda12g00454 . 1 287 TCP Transcription Factor Family AT3G27010 53.4 1.2e-66 250.4
Bda07g01383 . 7 243 TCP Transcription Factor Family AT3G27010 57.9 4.5e-58 221.9
Bda14g00462 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda14g00488 . 1 259 TCP Transcription Factor Family AT5G08330 51.9 2.8e-60 228.8
Bda15g00079 . 35 259 TCP Transcription Factor Family AT5G08330 54.1 5.1e-54 208.0
Bda15g00075 . 35 258 TCP Transcription Factor Family AT5G08330 53.3 7.4e-53 204.1
Bda12g00823 BCT 18 223 TCP Transcription Factor Family AT1G53230 52.1 2.4e-45 179.9
Bda09g00513 . 18 272 TCP Transcription Factor Family AT3G15030 50.4 1.3e-55 214.2
Bda14g00885 BCT 31 173 TCP Transcription Factor Family AT5G60970 57.6 3.7e-40 162.5
Bda14g01404 . 23 209 TCP Transcription Factor Family AT2G31070 54.0 4.7e-43 172.2
Bda15g00870 . 8 192 TCP Transcription Factor Family AT2G31070 53.5 2.2e-40 163.3
Bda15g00925 . 25 208 TCP Transcription Factor Family AT2G31070 53.3 2.9e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17137 PF03634 TCP 2.20E-32 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00079 Bda_Chr15 FPKM 6.196121 8.216844 12.890808 14.292472 12.33709 11.760288 11.661323 13.986734 15.885444