Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00095 TCTGGAACTGGAAGTCCTTATTTTGATGATGTGCGGAGTAAACCTGAGGTTATTGATCCTCCACAAAATGAAGATATGATGGATGTTGGTGAAAGCGGGAATGATCCTGCTCAAAGTGGCTTAAAACCTAACTTGATTGTCACCAGCAGTGTGCGGGACCTTTTAGAATGTCCTGTGTGTTTAAATGCTATGTACCCTCCCATTCATCAGTGTTCAAATGGTCACACACTGTGCTCTGTTTGCAAGCCCAGGGTGCACAACCGGTGCCCCACATGTAGGCATGAACTTGGCAATATTAGATGCCTGGCATTGGAGAAGGTGGCTGCATCTCTAGAACTTCCATGTAAATATGAGACCTTTGGTTGCTTGGGCATATATCCTTATTACAGCAAGCTTAAACATGAATCCCAGTGTGTTTATAGGCCTTATAATTGTCCCTATGCTGGATCAGAATGTGCGGTCATTGGTGATATACCTTATCTGGTGTCACACCTAAAAGATGATCATAAAGTTGATATGCATACTGGCAGTACTTTCAACCATCGTTATGTGAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGCCAGTATTTCTGCTTGCATTTTGAGGCATTTCAGCTTGGAATGGCTCCCGTCTACATAGCTTTTTTACGGTTTATGGGGGATGATCATGAGGCAAAGAACTACAGCTACAGCCTGGAGGTTGGGGGAAATGGCAGGAAGATGATTTGGCAAGGAGTTCCGAGGAGTATTAGAGACAGTCACCGTAAAGTTCGAGACAGTTTTGACGGGCTAATCATCCAACGGAATATGGCTCTCTTTTTTTCTGGAGGAGATCGGAAGGAATTAAAGCTTAGGGTGACTGGAAGAATCTGGAAAGAGCAG 915 44.04 SGTGSPYFDDVRSKPEVIDPPQNEDMMDVGESGNDPAQSGLKPNLIVTSSVRDLLECPVCLNAMYPPIHQCSNGHTLCSVCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYETFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECAVIGDIPYLVSHLKDDHKVDMHTGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDHEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3204074 3210532 - Bda033266 Bda15g00095 21790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00095 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 109 IPR013083 -
Bda15g00095 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Bda15g00095 305 MobiDBLite consensus disorder prediction 1 42 - -
Bda15g00095 305 SUPERFAMILY TRAF domain-like 110 302 - -
Bda15g00095 305 SUPERFAMILY RING/U-box 48 96 - -
Bda15g00095 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 305 - -
Bda15g00095 305 CDD Sina 171 299 - -
Bda15g00095 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bda15g00095 305 CDD RING-HC_SIAHs 55 93 - -
Bda15g00095 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 305 - -
Bda15g00095 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Bda15g00095 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Bda15g00095 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda14g00436 Bda15g00095 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00126 Bda-Chr5:5975431 Bda15g00095 Bda-Chr15:3204074 3.72E-169 dispersed
Bda11g00212 Bda-Chr11:2638936 Bda15g00095 Bda-Chr15:3204074 6.92E-169 dispersed
Bda07g01094 Bda-Chr7:12823184 Bda15g00095 Bda-Chr15:3204074 5.98E-23 transposed
Bda09g00286 Bda-Chr9:3537484 Bda15g00095 Bda-Chr15:3204074 6.86E-30 transposed
Bda14g00436 Bda-Chr14:3144039 Bda15g00095 Bda-Chr15:3204074 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00095 K04506 - rcu:8270897 606.675