Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00106 ATGTATGGTTCAGATTGGGAAAGTAGACTTGAGGCAAAGGAGTTGCAAGCTAATTTTGTGCACCTGAGTATTTTAAGCAAGTACTATAAACGTGTATACCAGGAATTCTTCACTATTGATGCTAATGCCAATAAGCAGCCAACTACTCTCAGTTCCTTAGATTATGTTTCAGACTACCAACAATTTGGTTGGTTGCTATTTTTGGCACTCCGAGTACACACATTTAGCCGTTTCAAAGACTTAGTGACTTGCACCAATGGCCTACTTTCTATTTTGGCTATCTTGATAATTCACCTTCCTGTCCAATTCAGAAACTTCAACATACTTGAATCTCAACGCTTTGTTAAGAAAGGCGATGGTAGAGTAGACCTGATTGGATCACTTTGCAACCTGTATGAAACCTCAGAAGAAGAATTGAGGAAAACAATGGAAAAGGCTAATAATCTGATTGAAGACATTTTGAAGAAGAAATCATGTCCAGCTTCTGAATGTTCTAGTGAATGTCTGAAGAATATTGATACAGATGGTTTGACGCACTTTGAAGATCTGATGGAGGCATCATCTTTATCATCGAGTTTAGATATTTTAGAGAAGGATTATGAAAATGCATTTCGGAATAAGGGGGAATTTGATGAGAGAGTATTCATCTATGAAGAAGACAGCTTACTTGGTTCAGGAAGTTTGTCTGCGGGTGCCACTAATATAATTGGTGTCAAGAGAAATTTTGATTTAATGGCATCGCCTGCTAGGACAATAACAAGCCCTCTGTCTCCTCTTCGGTCCCCTGCTTCTCATGCCAATGGTATTCACGGAGTTGCTAACTCTAAAATGGCAGCAACACCAGTAAGCACAACAATGACAACAGCAAAGTGGCTACGTACTGTTATTTCTCCACTTCCAGCTAAAGCCTCAGCTGAGTTAGAGCACTTTCTGGCTTCTTGTGATAGAGATGTCACTAATGACGTAGTTCGTAGGGCACTTATTATTTTAGAGGCCATATTTCCTACTAGTTCCCGTGGAGATCATTGTATAGCTGGTAACTTACATAGTGCAAACCTCATGGACAACATTTGGGCCGAGCAACGAAGACTAGAAGCACTGAAGTTATATTATCGAGTTTTGGAAGCAATGTGCAGAGCAGAGGCTCAAATATTGCATGCGAATAATTTGACCTCTCTACTAACCAATGAGAGGTTCCATAGGTGTATGTTGGCCTGTTCTGCCGAACTTGTTCTGGCAACACACAAAACTGTTACAATGTTGTTTCCTGCAGTGTTGGAAAGGACTGGCATTACAGCCTTTGATCTTAGCAAGGTGATAGAGAGTTTCGTGAGACATGAAGAATCTCTTCCAAGAGAATTGAGGCGACACTTGAATTCATTGGAAGAACGACTGTTGGAGAGTATGGTGTGGGAAAAGGGTTCATCAATGTATAATTCTTTGATAGTTGCTAAACCAGGTCTTACAACAGAAATAAACCGTCTAGGGTTTTTAGCAGAACCGATGCCATCTTTGGATGCTATTGCATTGCTCATAAACTTTTCTGGTGTTGGGTTGCCCCCTGTGCTTAATTTACAAAAGCATGAGATCGTCCAAGGTCAGAATGGAGATATAAGGTCTCCAAAAAGATTGTGCCCAGATTATCGAAGTGTGTTAGTGGAGCGAAATTCGTTTACTTCTCCAGTGAAGGAGCGACTAATGTGCTTTAGTAACCTTAAATCAAAGTTACTGCCACCTCCTTTACAGTCCGCCTTTGCGAGTCCTACACGTCCTATTCCTGGAGGTGGGGGGGAAACATGTGCAGAAACTGGAATTAACATATTCTTTAGCAAAATTGTAAAGTTGGCTGCGGTTAGAATCAGTGGTATGGTTGAAAGGCTGGAACTTTCTCAGCAGATACGGGAGGATGTCTACGACCTTTTTCAACAAATCCTAAATCAGAAGACTTCACTTCTTTTCAATCGTCACATTGACCAGATCATCCTTTGCTGTTTCTATGTCATTGCAAAGATTTCTCAATTAAATTTGATTTCTCAATCAAATTTGACATTTAGAGAAATCATTGACAAATATAGGATGCAACCACATTGCAAAACACAAGTTTTTTGCAGTGTTTTTGTTGATTGGTCGCCTGCCCGCCGTAACGGAAGAACCGGTCAGGATCATGTTGATATAATCAAATTCTATAATGAAATGTTCATCCCTGTTGTGAAACCTCTGCTGGTCAACTTTGGCCCTGCTGGTCCTACTACAAAAACTCATAGAGTTCCTGAGGGTTCCAGCAATATTGATGCCCCATGTCCTGGATCGCCGAAAAGATCTCCTTTCCCAAGTCTTCCTGATATGTCTCCCAAAAAGGTTTCTGCTGCACATAATGTCTATGTCTCTCCGTTAAGATCATCAAAGATGGATGCCTTAATTTCACACAGCTCCAAAAGCTATTATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCTTCGAAAGACTTGACTGCCATAAACAACCGCTTAAATGGGACTCGGAAGCTTCGTGGAATGCTCAATTTTGACGATGTAGATGTTGGTTTGGTGAGTGATTCAATGGTTGCCAACAGCCTTTACCTTCAAAACGGGAGCTGTGCATCTTCGTCGGGCACGACAATTAAATCGGAACAACCTGACTCCTGA 2673 41.11 MYGSDWESRLEAKELQANFVHLSILSKYYKRVYQEFFTIDANANKQPTTLSSLDYVSDYQQFGWLLFLALRVHTFSRFKDLVTCTNGLLSILAILIIHLPVQFRNFNILESQRFVKKGDGRVDLIGSLCNLYETSEEELRKTMEKANNLIEDILKKKSCPASECSSECLKNIDTDGLTHFEDLMEASSLSSSLDILEKDYENAFRNKGEFDERVFIYEEDSLLGSGSLSAGATNIIGVKRNFDLMASPARTITSPLSPLRSPASHANGIHGVANSKMAATPVSTTMTTAKWLRTVISPLPAKASAELEHFLASCDRDVTNDVVRRALIILEAIFPTSSRGDHCIAGNLHSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFVRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPGLTTEINRLGFLAEPMPSLDAIALLINFSGVGLPPVLNLQKHEIVQGQNGDIRSPKRLCPDYRSVLVERNSFTSPVKERLMCFSNLKSKLLPPPLQSAFASPTRPIPGGGGETCAETGINIFFSKIVKLAAVRISGMVERLELSQQIREDVYDLFQQILNQKTSLLFNRHIDQIILCCFYVIAKISQLNLISQSNLTFREIIDKYRMQPHCKTQVFCSVFVDWSPARRNGRTGQDHVDIIKFYNEMFIPVVKPLLVNFGPAGPTTKTHRVPEGSSNIDAPCPGSPKRSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKLRGMLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGTTIKSEQPDS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 3314650 3320574 - Bda011879.1 Bda15g00106 21801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00106 890 Gene3D - 284 471 - -
Bda15g00106 890 Gene3D - 59 216 - -
Bda15g00106 890 Coils Coil 132 156 - -
Bda15g00106 890 SUPERFAMILY Cyclin-like 603 778 IPR036915 -
Bda15g00106 890 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 1 877 IPR028309 GO:0006357|GO:0051726
Bda15g00106 890 MobiDBLite consensus disorder prediction 751 782 - -
Bda15g00106 890 SMART DUF3452_2 1 98 IPR024599 -
Bda15g00106 890 Pfam Retinoblastoma-associated protein B domain 605 738 IPR002719 GO:0005634|GO:0051726
Bda15g00106 890 Pfam Retinoblastoma-associated protein A domain 280 481 IPR002720 GO:0005634|GO:0051726
Bda15g00106 890 Gene3D - 560 762 - -
Bda15g00106 890 SMART RB_A_2 280 481 IPR002720 GO:0005634|GO:0051726
Bda15g00106 890 Pfam Domain of unknown function (DUF3452) 1 98 IPR024599 -
Bda15g00106 890 PANTHER BNACNNG22930D PROTEIN 1 877 - -
Bda15g00106 890 SUPERFAMILY Cyclin-like 288 483 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00884 Bda-Chr4:58607882 Bda15g00106 Bda-Chr15:3314650 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17141 PF01858 RB_A 1.20E-62 CL0065 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00106 K04681 - csv:101219810 1399.8