Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00151 ATGCTGAATCTCCAATCTAAGAACCAAGCTAACCCATCCTGCCTCACCGGGAACCCAATAGATGACTGCTGGCGGTGCGACCAAAACTGGCGAACAAACCGGCAAAGGCTCGCCGATTGCGGCATTGGGTTCGGCCAAGACGCCATGGGAGGAAAAGGAGGCCAGATCTACACGGTCACCGACTCTTCAGATTCAAATCCAGCGAACCCCACTCCGGGAACTCTACGGTACGCTGTCATCCAAGACGAACCCCTCTGGATCATCTTCTCCGCCGACATGACCATCAACCTAAAACACGAGCTCATCTTCAACAGCTTCAAAACCATCGATGGCCGCGGAGCCAACGTTCACATCACCGGCGGCGGGTGCATCACCCTTCAGTATGTCTCAAACGTAATAATCCACAACATCAACATCCACCATTGTAGGCCAACTGGAAATACCAACATACGGTCGAGTCCAACCCAAATCCAGCACCGTAGCATATCAGACGGCGACGGCATCTCCATCTTCGGCTCGCGCAAAATCTGGATTGACCATTGCTCACTCTCGTACTGCAAAGACGGTCTGATCGACACAGTAATGGGGTCCACCGGAATAACAATATCGAACAACTACTTCTCGCATCATGATGAGGTGATGCTGTTGGGCCACGACGATAAGTATGAACCAGATTCTGGGATGCAGGTGACCATAGCTTTCAATCACTTCGGTGTAGCGCTGGTACAACGTATGCCTCGGTGTAGACGAGGGTACATACACGTTGTGAATAATGATTTCACGGAGTGGGAGATGTATGCCATCGGCGGTAGTGCCAACCCTACCATAAACAGTCAGGGAAATAGATACACTGCTCCGGCGGACACTAATGCCAAAGAGGTGACGAGGCGTTTGGACACCGGAGAAGTGGAGTGGACGGATTGGAACTGGAGGACGGTGGGTGACATACTGGCGAACGGAGCATTCTTCGTTCCTTCCGGTGTTGGTCTCAGCAGTCTCTACTCTAAAGCTTACAGTGTCGACCCCAAATCAGCTGGTCTGATTGACCAGATAACCATCAACGCCGGTGCGTTTGGTGGGCCCAGAGATAATAGTAAGAGCACCGGATATGGCAGTGCCACGGCCAATAATCAGGGAACGACCACCGGCGACGACGGAGACATTTTTGGAATGATCTTCCGGGGTGCTGTTAGCGGCGCACTTGGCCGACGACTATCATGGGTTAACTCTATATTCCAATATCTTGTAATTCTCTTAACTTTGAGCAACATTACCCATTTTGCTTCTCTATTTTTCTCTCAGTTGCCATTGGGTTTGTAG 1320 51.06 MLNLQSKNQANPSCLTGNPIDDCWRCDQNWRTNRQRLADCGIGFGQDAMGGKGGQIYTVTDSSDSNPANPTPGTLRYAVIQDEPLWIIFSADMTINLKHELIFNSFKTIDGRGANVHITGGGCITLQYVSNVIIHNINIHHCRPTGNTNIRSSPTQIQHRSISDGDGISIFGSRKIWIDHCSLSYCKDGLIDTVMGSTGITISNNYFSHHDEVMLLGHDDKYEPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSANPTINSQGNRYTAPADTNAKEVTRRLDTGEVEWTDWNWRTVGDILANGAFFVPSGVGLSSLYSKAYSVDPKSAGLIDQITINAGAFGGPRDNSKSTGYGSATANNQGTTTGDDGDIFGMIFRGAVSGALGRRLSWVNSIFQYLVILLTLSNITHFASLFFSQLPLGL 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4087033 4088631 + Bda011930.1 Bda15g00151 21846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00151 439 PANTHER PECTATE LYASE 18-RELATED 4 377 IPR045032 GO:0030570
Bda15g00151 439 Gene3D - 17 359 IPR012334 -
Bda15g00151 439 Pfam Pectate lyase 100 281 IPR002022 -
Bda15g00151 439 SMART amb_all 92 289 IPR002022 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 40 57 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 64 89 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 337 360 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 244 263 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 100 116 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 266 285 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 308 332 IPR018082 -
Bda15g00151 439 PRINTS Pollen allergen Amb family signature 164 185 IPR018082 -
Bda15g00151 439 SUPERFAMILY Pectin lyase-like 10 357 IPR011050 -
Bda15g00151 439 PANTHER PECTATE LYASE 4 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00151 Bda-Chr15:4087033 Bda12g00688 Bda-Chr12:33372667 3.82E-175 dispersed
Bda14g00053 Bda-Chr14:450586 Bda15g00151 Bda-Chr15:4087033 0 wgd
Bda14g00368 Bda-Chr14:2672466 Bda15g00151 Bda-Chr15:4087033 0 wgd
Bda15g00151 Bda-Chr15:4087033 Bda03g00722 Bda-Chr3:6094621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00151 K01728 - zju:107413230 634.795