Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda15g00186 | ATGTTGGATCTTAACTTCTATGATACCCGTAGTGATTCAATGGAGGACCCCTATTTCCCTGCTAATTTTGTTACCCAACTGGAAGATTCTGGCACTTCCAATTCCTCCATTGTTAACGCGGAAGAAGCTGCAGCTCCAAGCTATAATGGAAAAGATGAAGATTCATTTAACACCGCCACCAATTGGGTAGTGGATGAAAACGCATCGTCGAAACTTGTAACGCAGCCTCTTTTTCGGGTCGCCGGAAACGGGAGAGACTGGGATTCGGAGCTTCGTTTGGGGTTATCCACCTTACCGATATCTCCGTGGCTAAACTTGTCGTTCTCCAACTCCAGTAGCGGAGTAAAGGAAGGTGAAAAGTCCTCGGCAAAAGCAACATCTAGTGAGGAAAAGCCGGCGAGGTCCACGCTCCCGAGCTCTCAGTACCGTGGCGTCACTTTTTACCGGCGAACCGGCCGCTGGGAATCACACATCTGGGACTGTGGGAAGCAACTGTATTTGGGTGGATTTGACACTGCTCATGCGGCAGCAAGAGCATATGATAGAGCTGCAATTAAATTTAGAGGAATAGATGCTGATATTAATTTCAACACCAGCGATTATGAAGAAGATATAAAACAGACGAAGAACTTGACGAAGGAGGAATTCGTGTACGTTCTTCGTCGCCATAGCAGCAGATTCTCTCGAGGAAGCTCGAACATTCAAGCCTCTACGCTTCGAAAAAGTGGGCAATGGGAGAATGATGACCAGCTTGAACTGAGTCTTGGGATTTCGAAAAATTCAGAAGTTATAATTGGAAACGAGAGAAATGGGATTCATGGATTGCCATTTTAA | 834 | 46.04 | MLDLNFYDTRSDSMEDPYFPANFVTQLEDSGTSNSSIVNAEEAAAPSYNGKDEDSFNTATNWVVDENASSKLVTQPLFRVAGNGRDWDSELRLGLSTLPISPWLNLSFSNSSSGVKEGEKSSAKATSSEEKPARSTLPSSQYRGVTFYRRTGRWESHIWDCGKQLYLGGFDTAHAAARAYDRAAIKFRGIDADINFNTSDYEEDIKQTKNLTKEEFVYVLRRHSSRFSRGSSNIQASTLRKSGQWENDDQLELSLGISKNSEVIIGNERNGIHGLPF | 277 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 4427851 | 4429037 | - | Bda011970.1 | Bda15g00186 | 21881 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda15g00186 | 277 | MobiDBLite | consensus disorder prediction | 110 | 137 | - | - | |
| Bda15g00186 | 277 | CDD | AP2 | 140 | 199 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda15g00186 | 277 | SUPERFAMILY | DNA-binding domain | 140 | 198 | IPR016177 | GO:0003677 | |
| Bda15g00186 | 277 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 | 1 | 246 | - | - | |
| Bda15g00186 | 277 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 246 | - | - | |
| Bda15g00186 | 277 | Pfam | AP2 domain | 141 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda15g00186 | 277 | ProSiteProfiles | AP2/ERF domain profile. | 141 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda15g00186 | 277 | SMART | rav1_2 | 141 | 203 | IPR001471 | GO:0003700|GO:0006355 | |
| Bda15g00186 | 277 | Gene3D | AP2/ERF domain | 140 | 199 | IPR036955 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda14g00335 | Bda15g00186 | CCT | |
| Bda14g00335 | Bda15g00186 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda15g00186 | Bda-Chr15:4427851 | Bda04g00251 | Bda-Chr4:19847284 | 1.03E-12 | dispersed | |
| Bda14g00335 | Bda-Chr14:2389991 | Bda15g00186 | Bda-Chr15:4427851 | 1.67E-100 | wgd | |
| Bda15g00186 | Bda-Chr15:4427851 | Bda02g00787 | Bda-Chr2:48582555 | 5.79E-12 | wgd | |
| Bda15g00186 | Bda-Chr15:4427851 | Bda03g00754 | Bda-Chr3:6358952 | 6.36E-14 | wgd | |
| Bda15g00186 | Bda-Chr15:4427851 | Bda09g01480 | Bda-Chr9:46582710 | 6.20E-12 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 17145 | PF00847 | AP2 | 4.30E-10 | CL0081 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda15g00186 | K09284 | - | qsu:112017577 | 223.016 |