Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00228 ATGAAGGCAATGGCAGCCATATTTACAGTGTTCATTCTAACCGGTGTTGTTCTAACGCTTGTGGACGCCAGAATTCCAGGAGTTTACAGCGGAGGAGATTGGCAGAGCGCCTACGCTACTTTTTACGGCGGAAGCGACGCCTCGGGAACAATGGGAGGGGCGTGTGGGTATGGAAACTTGTATAGCCAAGGCTACGGCAGTAGCACGGCGGCGCTAAGCACAGCGCTCTTCAACAACGGTATGAGCTGTGGCGCTTGCTTCGAGATCAAGTGCGCGAACGACCCGAAATGGTGCCACTCAGGCAGCCCGTCGATCTTGATCACAGCCACCAATTTCTGCCCTCCAAACTACGCTCTTCCCAGCGATAATGGCGGCTGGTGCAACCCTCCTCGCCCACACTTCGACCTCGCTATGCCCATGTTCCTCAAAATAGCCGAATACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGAGTGTCATGCCGTAAGCAAGGAGGTATCAGGTTTACGATCAACGGATTCAAATACTTCAATTTAGTTCTAATCACCAACGTCGCCGGCGCCGGAGATATCGTGAAAGCGAGCGTCAAGGGGTCCAGAACTGGGTGGATGATCTTGAGTCGGAATTGGGGCCAAAACTGGCAGTCGAACGCTGTTTTGGTTGGTCAGTCACTTTCATTCAGAGTCACAGGCAGTGACCGCCGCACCTCCACTTCTTGGAACATAGTCCCCTCGAACTGGCAGTTCGGCCAAACTTTCACCGGAAATAATTTCAGGGTCTGA 783 53.77 MKAMAAIFTVFILTGVVLTLVDARIPGVYSGGDWQSAYATFYGGSDASGTMGGACGYGNLYSQGYGSSTAALSTALFNNGMSCGACFEIKCANDPKWCHSGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVSCRKQGGIRFTINGFKYFNLVLITNVAGAGDIVKASVKGSRTGWMILSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFTGNNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4971370 4972360 - Bda012021.1 Bda15g00228 21923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Bda15g00228 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Bda15g00228 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Bda15g00228 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Bda15g00228 260 Gene3D - 166 258 IPR036749 -
Bda15g00228 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Bda15g00228 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Bda15g00228 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Bda15g00228 260 SMART dpbb_1 69 156 IPR007112 -
Bda15g00228 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Bda15g00228 260 PANTHER EXPANSIN-A15 9 259 IPR002963 GO:0009664
Bda15g00228 260 Gene3D - 22 162 IPR036908 -
Bda15g00228 260 SUPERFAMILY PHL pollen allergen 163 255 IPR036749 -
Bda15g00228 260 PANTHER EXPANSIN-A4 9 259 - -
Bda15g00228 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda15g00228 Bda15g00354 CCT
Bda15g00354 Bda15g00228 ECH
Bda15g00228 Bda15g00354 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda12g00322 Bda-Chr12:3555801 Bda15g00228 Bda-Chr15:4971370 2.36E-90 dispersed
Bda15g00228 Bda-Chr15:4971370 Bda15g00354 Bda-Chr15:6419088 2.72E-150 dispersed
Bda01g00226 Bda-Chr1:26088656 Bda15g00228 Bda-Chr15:4971370 1.43E-123 wgd
Bda15g00228 Bda-Chr15:4971370 Bda15g00345 Bda-Chr15:6303251 1.68E-149 wgd
Bda15g00228 Bda-Chr15:4971370 Bda02g00824 Bda-Chr2:48835106 5.98E-161 wgd
Bda15g00228 Bda-Chr15:4971370 Bda03g00784 Bda-Chr3:6554733 6.47E-159 wgd
Bda15g00228 Bda-Chr15:4971370 Bda05g00964 Bda-Chr5:58134678 1.71E-165 wgd
Bda15g00228 Bda-Chr15:4971370 Bda09g01508 Bda-Chr9:46841799 1.75E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00228 - - rcu:8261656 494.582