Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda15g00243 | ATGGAAGCCACACCCAAGTCCCCTGTTGTTCAAGTGGAAGAAGAAGCTCCTCCCCGGAGCTCGGTTACCGTCTCCGGCGCCTTTGAGGTGTCGGGTACTGTAGAGCACAGGCGTTCGACGGAGGTTGTGATTGAAATCGTCGGAGTAGTGCCGGAGAAGGGGCGGGGATCTTCTGCGTCTGAGTGTTCAGTGGAGGTGGATCTGGATCTGGATCTGGATCTGGATCGGCCCGTACAGGAGAATAAGTTTCATAAAGGAAAAGCAGAGAGGGATTGTAGGATTTGCCATCTGAGTTTAGGAGGAACGAATCACGAATCTGGAATTCCAATAGAACTGGGGTGCTCTTGCAAGAATGATTTAGCTGCTGCCCATAAACACTGTGCTGAGACTTGGTTCAAAATCAAGGGTAACAAGGTCTGTGAGATCTGCGGGTCAATTGCTCGGAATGTGACGGAAGTTAATGCACCAGACTCGGCAGAGTACCAGAGCATTGCAAGCAACGAGGCTATAATGGTGGCTGTAGCTCCGGCGGGACAGGTCCGGCGGTTCTGGCACGGCCATAGATTCCTAAACGTTCTGCTAGCTACAATGGTCTTCGCCTTTGTCATCTCCTGGCTCTTCCACTTCAACGTCCCCTCGTAA | 642 | 52.02 | MEATPKSPVVQVEEEAPPRSSVTVSGAFEVSGTVEHRRSTEVVIEIVGVVPEKGRGSSASECSVEVDLDLDLDLDRPVQENKFHKGKAERDCRICHLSLGGTNHESGIPIELGCSCKNDLAAAHKHCAETWFKIKGNKVCEICGSIARNVTEVNAPDSAEYQSIASNEAIMVAVAPAGQVRRFWHGHRFLNVLLATMVFAFVISWLFHFNVPS | 213 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 5071312 | 5072373 | - | Bda012036.1 | Bda15g00243 | 21938 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda15g00243 | 213 | SMART | ringv_2 | 91 | 144 | IPR011016 | GO:0008270 | |
| Bda15g00243 | 213 | SUPERFAMILY | RING/U-box | 88 | 146 | - | - | |
| Bda15g00243 | 213 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 84 | 150 | IPR011016 | GO:0008270 | |
| Bda15g00243 | 213 | CDD | RING_CH-C4HC3_MARCH | 92 | 144 | - | - | |
| Bda15g00243 | 213 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Bda15g00243 | 213 | PANTHER | ZINC FINGER, RING-CH-TYPE | 43 | 213 | - | - | |
| Bda15g00243 | 213 | PANTHER | OS01G0850200 PROTEIN | 43 | 213 | - | - | |
| Bda15g00243 | 213 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 158 | IPR013083 | - | |
| Bda15g00243 | 213 | Pfam | RING-variant domain | 92 | 143 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g01381 | Bda-Chr3:50097905 | Bda15g00243 | Bda-Chr15:5071312 | 1.27E-58 | dispersed | |
| Bda13g00673 | Bda-Chr13:7642895 | Bda15g00243 | Bda-Chr15:5071312 | 2.55E-19 | dispersed | |
| Bda10g00414 | Bda-Chr10:36376864 | Bda15g00243 | Bda-Chr15:5071312 | 7.10E-11 | transposed | |
| Bda14g00275 | Bda-Chr14:1858375 | Bda15g00243 | Bda-Chr15:5071312 | 5.00E-104 | wgd | |
| Bda15g00243 | Bda-Chr15:5071312 | Bda05g00947 | Bda-Chr5:57993974 | 1.06E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda15g00243 | - | - | jre:108991946 | 209.149 |