Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00255 ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTGCCCGCTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAGAGGAAGGATTGGCTTTCACTAGTGGCTGTGCATAGCGATTGTTGGTTGCTCTCGGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAGGAACGCCACCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATACTAAGCTAATCGACGAAAGTTACGGAGAAGACGAAGACGAGCACAGTGACGCTCTTTGTGGAAGCTGCGGTGGTAATTACAGTGGGGACGAGTTTTGGATCGGGTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCTTAA 726 46.97 MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSRNATKRSIDGQARSSNTKLIDESYGEDEDEHSDALCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5144962 5153686 + Bda012050.1 Bda15g00255 21950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00255 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Bda15g00255 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Bda15g00255 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Bda15g00255 241 SMART PHD_3 187 235 IPR001965 -
Bda15g00255 241 MobiDBLite consensus disorder prediction 149 166 - -
Bda15g00255 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Bda15g00255 241 Pfam PHD-finger 188 236 IPR019787 -
Bda15g00255 241 CDD PHD_AL_plant 187 237 IPR044104 -
Bda15g00255 241 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Bda15g00255 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 236 IPR013083 -
Bda15g00255 241 MobiDBLite consensus disorder prediction 142 166 - -
Bda15g00255 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00163 Bda-Chr1:23147842 Bda15g00255 Bda-Chr15:5144962 9.09E-79 dispersed
Bda13g01589 Bda-Chr13:39420346 Bda15g00255 Bda-Chr15:5144962 9.84E-97 dispersed
Bda14g00249 Bda-Chr14:1747643 Bda15g00255 Bda-Chr15:5144962 1.95E-144 wgd
Bda15g00255 Bda-Chr15:5144962 Bda03g00819 Bda-Chr3:6954682 1.38E-123 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17150 PF12165 Alfin 7.30E-68 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00255 - - qsu:112011947 449.899