Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00255 ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTGCCCGCTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAGAGGAAGGATTGGCTTTCACTAGTGGCTGTGCATAGCGATTGTTGGTTGCTCTCGGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAGGAACGCCACCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATACTAAGCTAATCGACGAAAGTTACGGAGAAGACGAAGACGAGCACAGTGACGCTCTTTGTGGAAGCTGCGGTGGTAATTACAGTGGGGACGAGTTTTGGATCGGGTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCTTAA 726 46.97 MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSRNATKRSIDGQARSSNTKLIDESYGEDEDEHSDALCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5144962 5153686 + Bda012050.1 Bda15g00255 21950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00255 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Bda15g00255 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Bda15g00255 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Bda15g00255 241 SMART PHD_3 187 235 IPR001965 -
Bda15g00255 241 MobiDBLite consensus disorder prediction 149 166 - -
Bda15g00255 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Bda15g00255 241 Pfam PHD-finger 188 236 IPR019787 -
Bda15g00255 241 CDD PHD_AL_plant 187 237 IPR044104 -
Bda15g00255 241 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Bda15g00255 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 236 IPR013083 -
Bda15g00255 241 MobiDBLite consensus disorder prediction 142 166 - -
Bda15g00255 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00255 - - - qsu:112011947 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00163 Bda-Chr1:23147842 Bda15g00255 Bda-Chr15:5144962 9.09E-79 dispersed
Bda13g01589 Bda-Chr13:39420346 Bda15g00255 Bda-Chr15:5144962 9.84E-97 dispersed
Bda14g00249 Bda-Chr14:1747643 Bda15g00255 Bda-Chr15:5144962 1.95E-144 wgd
Bda15g00255 Bda-Chr15:5144962 Bda03g00819 Bda-Chr3:6954682 1.38E-123 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00428 BCT 1 252 Alfin-like Transcription Factor Family AT1G14510 82.5 4.7e-114 407.5
Bda06g00180 BCT 1 250 Alfin-like Transcription Factor Family AT1G14510 85.2 1.8e-113 405.6
Bda01g01999 . 1 249 Alfin-like Transcription Factor Family AT1G14510 74.3 2.6e-96 348.6
Bda13g01589 . 4 250 Alfin-like Transcription Factor Family AT1G14510 68.3 2.8e-95 345.1
Bda11g01029 CCT 1 250 Alfin-like Transcription Factor Family AT1G14510 73.3 4.8e-95 344.4
Bda02g00379 CCT 9 261 Alfin-like Transcription Factor Family AT1G14510 65.4 1.2e-85 313.2
Bda15g00255 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.7 9.8e-80 293.5
Bda03g00819 . 7 250 Alfin-like Transcription Factor Family AT1G14510 58.2 5.0e-76 281.2
Bda14g00249 . 8 238 Alfin-like Transcription Factor Family AT1G14510 56.3 3.7e-71 265.0
Bda01g00163 . 1 195 Alfin-like Transcription Factor Family AT1G14510 50.2 2.1e-45 179.5
Bda01g01999 . 1 251 Alfin-like Transcription Factor Family AT5G26210 77.2 3.6e-106 381.3
Bda11g01029 CCT 1 252 Alfin-like Transcription Factor Family AT5G26210 76.4 4.0e-105 377.9
Bda13g01589 . 4 253 Alfin-like Transcription Factor Family AT5G26210 71.0 3.4e-104 374.8
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT5G26210 75.2 6.4e-95 344.0
Bda02g00379 CCT 1 262 Alfin-like Transcription Factor Family AT5G26210 70.6 1.9e-94 342.4
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT5G26210 71.3 2.7e-93 338.6
Bda03g00819 . 4 252 Alfin-like Transcription Factor Family AT5G26210 57.3 2.0e-80 295.8
Bda15g00255 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.1 3.4e-80 295.0
Bda14g00249 . 7 238 Alfin-like Transcription Factor Family AT5G26210 54.1 1.1e-70 263.5
Bda01g00163 . 1 197 Alfin-like Transcription Factor Family AT5G26210 50.2 2.6e-48 189.1
Bda01g01999 . 3 251 Alfin-like Transcription Factor Family AT3G42790 77.5 1.2e-101 366.3
Bda11g01029 CCT 3 252 Alfin-like Transcription Factor Family AT3G42790 76.8 1.7e-100 362.5
Bda13g01589 . 6 252 Alfin-like Transcription Factor Family AT3G42790 68.1 4.8e-95 344.4
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT3G42790 72.5 5.9e-93 337.4
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT3G42790 69.5 5.0e-92 334.3
Bda02g00379 CCT 1 262 Alfin-like Transcription Factor Family AT3G42790 68.8 1.3e-87 319.7
Bda15g00255 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 9.7e-80 293.5
Bda03g00819 . 6 252 Alfin-like Transcription Factor Family AT3G42790 55.8 1.6e-77 286.2
Bda14g00249 . 7 238 Alfin-like Transcription Factor Family AT3G42790 54.4 7.0e-70 260.8
Bda15g00255 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.3 4.9e-113 404.1
Bda03g00819 . 4 253 Alfin-like Transcription Factor Family AT5G05610 70.9 9.3e-104 373.2
Bda14g00249 . 1 241 Alfin-like Transcription Factor Family AT5G05610 74.1 3.0e-102 368.2
Bda13g01589 . 11 252 Alfin-like Transcription Factor Family AT5G05610 66.4 7.6e-90 327.0
Bda01g01999 . 4 251 Alfin-like Transcription Factor Family AT5G05610 63.5 1.1e-88 323.2
Bda11g01029 CCT 4 252 Alfin-like Transcription Factor Family AT5G05610 61.2 7.9e-87 317.0
Bda08g00428 BCT 9 254 Alfin-like Transcription Factor Family AT5G05610 64.9 1.5e-85 312.8
Bda06g00180 BCT 9 252 Alfin-like Transcription Factor Family AT5G05610 61.0 6.3e-84 307.4
Bda02g00379 CCT 6 262 Alfin-like Transcription Factor Family AT5G05610 55.8 1.4e-78 289.7
Bda01g00163 . 1 198 Alfin-like Transcription Factor Family AT5G05610 63.6 2.5e-64 242.3
Bda15g00255 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 1.5e-95 345.9
Bda14g00249 . 45 241 Alfin-like Transcription Factor Family AT3G11200 77.0 3.3e-90 328.2
Bda03g00819 . 42 253 Alfin-like Transcription Factor Family AT3G11200 72.7 8.5e-86 313.5
Bda01g01999 . 44 251 Alfin-like Transcription Factor Family AT3G11200 65.1 4.1e-72 268.1
Bda13g01589 . 47 252 Alfin-like Transcription Factor Family AT3G11200 62.6 1.2e-71 266.5
Bda11g01029 CCT 44 252 Alfin-like Transcription Factor Family AT3G11200 63.5 2.0e-71 265.8
Bda08g00428 BCT 44 254 Alfin-like Transcription Factor Family AT3G11200 64.0 1.7e-70 262.7
Bda06g00180 BCT 44 252 Alfin-like Transcription Factor Family AT3G11200 64.6 8.5e-70 260.4
Bda01g00163 . 1 198 Alfin-like Transcription Factor Family AT3G11200 62.2 1.3e-62 236.5
Bda02g00379 CCT 44 262 Alfin-like Transcription Factor Family AT3G11200 56.8 6.5e-62 234.2
Bda08g00428 BCT 1 161 Alfin-like Transcription Factor Family AT2G02470 85.7 4.6e-77 284.6
Bda06g00180 BCT 1 161 Alfin-like Transcription Factor Family AT2G02470 86.3 7.9e-77 283.9
Bda01g01999 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 1.1e-65 246.9
Bda11g01029 CCT 1 164 Alfin-like Transcription Factor Family AT2G02470 72.6 5.3e-65 244.6
Bda02g00379 CCT 1 164 Alfin-like Transcription Factor Family AT2G02470 73.8 7.6e-64 240.7
Bda13g01589 . 4 161 Alfin-like Transcription Factor Family AT2G02470 74.1 1.9e-62 236.1
Bda15g00255 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 7.2e-54 207.6
Bda03g00819 . 7 154 Alfin-like Transcription Factor Family AT2G02470 65.6 1.8e-52 203.0
Bda14g00249 . 8 153 Alfin-like Transcription Factor Family AT2G02470 63.1 6.5e-47 184.5
Bda11g01029 CCT 3 164 Alfin-like Transcription Factor Family AT5G20510 78.4 1.1e-72 269.6
Bda01g01999 . 3 167 Alfin-like Transcription Factor Family AT5G20510 77.6 1.5e-72 269.2
Bda02g00379 CCT 1 164 Alfin-like Transcription Factor Family AT5G20510 75.2 5.3e-70 260.8
Bda13g01589 . 6 167 Alfin-like Transcription Factor Family AT5G20510 72.2 9.4e-67 250.0
Bda08g00428 BCT 3 164 Alfin-like Transcription Factor Family AT5G20510 73.2 4.7e-66 247.7
Bda06g00180 BCT 3 165 Alfin-like Transcription Factor Family AT5G20510 72.7 5.1e-65 244.2
Bda15g00255 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.7 7.7e-53 203.8
Bda03g00819 . 6 156 Alfin-like Transcription Factor Family AT5G20510 61.8 2.9e-52 201.8
Bda14g00249 . 7 136 Alfin-like Transcription Factor Family AT5G20510 65.2 5.9e-45 177.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17150 PF12165 Alfin 7.30E-68 No_clan Bda TF