Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00274 ATGGAACCAAAACAATTACCCATCATCAGCTTTTTGTCTTCTCTCCTACGTCTCTCCTCCTACACCCACTTTTACGCCATGGTTCTTGCGCCATTTTCTGCTGTCTTCCTCCTTCTTGCTGTTCTAAACCTCTGTCTTTGCCGCTCATCTGGGGATTACGGAGGGTGGGAGAGCGCCCATGCCACGTTCTATGGCGGGGGTGATGCATCTGGCACAATGGGAGGTGCATGCGGGTATGGAAACTTATATAGCCAAGGATATGGGACTAATACAGCAGCTCTGAGCACTGCTCTGTTCAACAATGGCTTGAGCTGCGGTTCCTGCTACGAAATAACTTGCCGGAGTGACTCGAAATCGTGCGTCGGAGGGACCATCACCGTCACAGCCACGAATTTCTGTCCCCCAAACAATGCATTGCCGAATGATAATGGTGGTTGGTGTAATCCTCCTCTTCAGCACTTCGACATGGCAGAACCTGCTTTCTTGCAAATCGCTCAGTACCGAGCCGGAATCGTTCCGGTCTCGTTTAGAAGAGTTCCCTGCATGAAGAAAGGAGGAATAAGGTTCACTGTGAATGGCCACTCTTTCTTCAACCTGGTGTTGGTCACAAACGTCGGAGGAGCAGGAGACGTTCACTCCGTGTCAATCAAAGGCTCGAAAACTGGTTGGCAGCCCATGTCGAGGAACTGGGGCCAGAATTGGCAGAGCAACTCCTACCTCAACGACCAAACCCTCTCCTTTCAAGTGACCACCAGTGATGGCCGGACCGTCACCAGCTACGATGTAGCACCGGAGAATTGGCAGTTTGGACAAACATTTGAGGGAACTCAATTTTAA 837 50.78 MEPKQLPIISFLSSLLRLSSYTHFYAMVLAPFSAVFLLLAVLNLCLCRSSGDYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCRSDSKSCVGGTITVTATNFCPPNNALPNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTVNGHSFFNLVLVTNVGGAGDVHSVSIKGSKTGWQPMSRNWGQNWQSNSYLNDQTLSFQVTTSDGRTVTSYDVAPENWQFGQTFEGTQF 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5518006 5519009 - Bda012074.1 Bda15g00274 21969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00274 278 Pfam Lytic transglycolase 91 176 IPR009009 -
Bda15g00274 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 275 IPR007117 -
Bda15g00274 278 Pfam Expansin C-terminal domain 187 264 IPR007117 -
Bda15g00274 278 Gene3D - 43 182 IPR036908 -
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 55 70 IPR007118 GO:0005576
Bda15g00274 278 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Bda15g00274 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 186 IPR007112 -
Bda15g00274 278 SUPERFAMILY PHL pollen allergen 183 275 IPR036749 -
Bda15g00274 278 SMART dpbb_1 91 176 IPR007112 -
Bda15g00274 278 Gene3D - 185 278 IPR036749 -
Bda15g00274 278 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 86 100 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Bda15g00274 278 PRINTS Expansin signature 113 124 IPR002963 GO:0009664
Bda15g00274 278 SUPERFAMILY Barwin-like endoglucanases 37 204 IPR036908 -
Bda15g00274 278 PANTHER EXPANSIN-A15 31 278 IPR002963 GO:0009664
Bda15g00274 278 PANTHER EXPANSIN 31 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g01067 Bda-Chr10:44677129 Bda15g00274 Bda-Chr15:5518006 3.81E-142 dispersed
Bda15g00274 Bda-Chr15:5518006 Bda05g00964 Bda-Chr5:58134678 3.64E-126 dispersed
Bda08g01191 Bda-Chr8:48014944 Bda15g00274 Bda-Chr15:5518006 2.44E-85 transposed
Bda14g00191 Bda-Chr14:1364563 Bda15g00274 Bda-Chr15:5518006 4.04E-144 wgd
Bda14g00205 Bda-Chr14:1429819 Bda15g00274 Bda-Chr15:5518006 1.49E-158 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00274 - K20628 nnu:104593779 439.884