Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00275 ATGCCCTCAACTCGCAGCTACTATTCCAAGACGAAACTTTGCGCTTTAATTGCGCCACCCCTCAGCGCCGAGTTGGGGAACCCGGTCCCGAAAACTCGAGAGCTTAGCGGTTTCCTTGATGATAAGCTCTTCTCAGTTGATCGTGCTCGCTTCTTCAATCCCCAGGGACAGGATTTCCGACGGACGATATATGGTGACGCCCCGGAGAGAACAGAGAGTCGAAATTGGAATGGAAATGGTAGTACTGCGACGGCCAGCGGCAAATCCTCCGACGAGGACGATGATGAAGAGGAGGACGAGGATGACGAAGTCGACGATGACGGCGTAGGTGATGTGGAGGGACTTGTTGCTGATCCTATTGGTCGTAAGAGCAATTGTAATGTTAACATAGACGCAAACAATCAAAGTGGTGGGAGTGGACTAACCGGCGGAAAAGAAATCGGGAACGGAAAACCAAAGCAACACTCTCTTTTTGAAATGCGATTGACCCAAGATGGACTGGGGAAGGATGGTGCCGTTTGCCAGTCAGGAAATCACGCCAGAGCAAGTCCGACTGAGAACAACCAGCTTGGAAGACTTGGGAACTACTCCAATGCAGTAACTATTGGAGAGTCCGAGAATGACATGTATTATTCACAGTTTCTGCAGGGAGCTGTATCATCTTCTTCTGGGCTGAAGGATTTGGGCGTGGAAAATGGCTCTGGGTTTAGTAGGAGAAAGGATTTCTCCTTTAATGGTGATGCTGGGGAGTCTTTGAGAGCAATCCTTTCGGACCCTGTGACGGATGCTCTTATGGACGATGCAATGATATTACCTTGTGGGCATTCATTTGGAAGTGGCGGTATACAACACGTGACTAGAATTAAAGCTTGCTACGCATGTTCTGTATCCGTGTCGGAAGATTCAATTGCTCCAAATCTCGCTCTTCGAGCTGCTGTCCAGGCCTTCCGCCGAGAAGAAGAGTTACAGCTGTATCGTTCACACAAAAGGAGAAGAGAGAGATTTGACCAGGATAAAAATGGTTATGGTGATATAACTCTCATGGACCAACCTAGGGGAAGAGGTGTGCAGTTTCCGTTTTCAGTGTCTGATCGAGTTATTATAAAGGGAAACAAGCGAACGCCACAGCGTTTTGTCGGTCGAGAGGCTGTCGTGACAACACAATGCTTGAATGGATGTGAAGACACTGGACAATGCAGAGAGTGTGAAACTTCAGTATCGCTCGCTAGCCAGGGTCGTTGA 1242 48.55 MPSTRSYYSKTKLCALIAPPLSAELGNPVPKTRELSGFLDDKLFSVDRARFFNPQGQDFRRTIYGDAPERTESRNWNGNGSTATASGKSSDEDDDEEEDEDDEVDDDGVGDVEGLVADPIGRKSNCNVNIDANNQSGGSGLTGGKEIGNGKPKQHSLFEMRLTQDGLGKDGAVCQSGNHARASPTENNQLGRLGNYSNAVTIGESENDMYYSQFLQGAVSSSSGLKDLGVENGSGFSRRKDFSFNGDAGESLRAILSDPVTDALMDDAMILPCGHSFGSGGIQHVTRIKACYACSVSVSEDSIAPNLALRAAVQAFRREEELQLYRSHKRRRERFDQDKNGYGDITLMDQPRGRGVQFPFSVSDRVIIKGNKRTPQRFVGREAVVTTQCLNGCEDTGQCRECETSVSLASQGR 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5523630 5527413 - Bda012075.1 Bda15g00275 21970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00275 413 MobiDBLite consensus disorder prediction 90 112 - -
Bda15g00275 413 SUPERFAMILY RING/U-box 252 323 - -
Bda15g00275 413 MobiDBLite consensus disorder prediction 72 87 - -
Bda15g00275 413 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 63 392 - -
Bda15g00275 413 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 63 392 - -
Bda15g00275 413 MobiDBLite consensus disorder prediction 69 129 - -
Bda15g00275 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00275 - - - vvi:100262140 444.506
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01037 BCT 2 718 Plant U-box Gene Family AT5G57035 51.4 1.0e-212 736.9
Bda15g00275 . 199 392 Plant U-box Gene Family AT5G05230 54.5 2.6e-49 193.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00275 Bda_Chr15 FPKM 0.982486 1.014477 0.375827 0.0 4.74381 4.722908 4.275759 0.699624 0.382452