Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00277 ATGGATCCCGACGCCTTCACGGCCAGTTTATTCAAGTGGGACCCTCGAGCTGCTGTTGGACCACCCAATCGCTTACTAGACCAGGTGGCTACTCCATCCGCCGGCGCCGCTGTTGTTACCACGACGTTCTCAGTCCGACCGAGGGGTCTGGGTGGGCTGGAAGACTTGTTTCAGGCTTACGGTATCAGATACTACACCGCAACAAAGATAGCAGAGCTTGGATTCACCGTGAGTACTCTGTTGAACATGAAAGACGTAGAGCTGGACGATATGATGAACAGTCTCTCGCAGATATTCCGGTGGGACCTTTTGGTCGGAGAGAGGTACGGCATTAAAGCGGCTGTTAGAGCCGAGAGAAGACGACTGGAAGATGAAATGGATTCCCGGCGCCGCCACTTACTCTCCGCTGATACTGTCAATAACGTTTTTGATGCTCTCTCTCAGGAAGGTCGATTATCGGAGGAGCCAGTGCGTCAAGAAAAGGAGGTGATCCGAAGCGGCGGAGGAGGACCAAGGGAGGTGATTGCAGCTTCAGAGAAGAAGAACCGACGACGTCGGAAGGGGCAAAGAAACCTGCTAGTTGATTTGGATAACGACGGAAACGATGTAGGAGAAGAAGACGACGACGACGACATTAATGATGGAAATGAAAGACAACGAGAACACCCTTTCATCGTGACAGAACCAGGAGAAGTTGCGAGAGGCAAGAAGAATGGCCTCGATTACCTCTTCCACCTTTACGAACAGTGCCGTGAATTTCTGATCCAGGTGCAGAATATAGCCAAGGACCGCGGCGAGAAATGCCCCACCAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCCGGAGCGAGCTACATCAACAAGCCCAAAATGCGGCACTACGTCCACTGCTACGCGCTGCATTGCCTGGACGAGGAGGCATCGAATGCGCTGAGGAGGGCGTTCAAAGACAGGGGGGAGAACGTCGGAGCTTGGCGACAAGCCTGCTACAAACCTCTGGTGGGCGTCGCCGCCCGGCGAGGGTGGGACATAGACGCGATATTCAACTCCCATCCTCGTTTGACTATTTGGTACGTCCCCACCAAACTCCGGCAGCTTTGTCACTCTGACCGCAATAGCGTTGCAGCTTCTAGCTGTGTCTCCAATGGCCGCGATCTCATTCCCTTC 1173 53.71 MDPDAFTASLFKWDPRAAVGPPNRLLDQVATPSAGAAVVTTTFSVRPRGLGGLEDLFQAYGIRYYTATKIAELGFTVSTLLNMKDVELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLEDEMDSRRRHLLSADTVNNVFDALSQEGRLSEEPVRQEKEVIRSGGGGPREVIAASEKKNRRRRKGQRNLLVDLDNDGNDVGEEDDDDDINDGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKDRGENVGAWRQACYKPLVGVAARRGWDIDAIFNSHPRLTIWYVPTKLRQLCHSDRNSVAASSCVSNGRDLIPF 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5541614 5542961 + Bda033278 Bda15g00277 21972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00277 391 MobiDBLite consensus disorder prediction 199 214 - -
Bda15g00277 391 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 214 377 IPR035209 GO:0003677
Bda15g00277 391 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Bda15g00277 391 PANTHER PROTEIN LEAFY 1 387 IPR002910 GO:0003677|GO:0006355
Bda15g00277 391 MobiDBLite consensus disorder prediction 151 167 - -
Bda15g00277 391 MobiDBLite consensus disorder prediction 150 221 - -
Bda15g00277 391 Gene3D Protein LEAFY 214 383 IPR038276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00277 - - - vvi:100252653 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00199 Bda-Chr14:1396639 Bda15g00277 Bda-Chr15:5541614 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00199 . 1 380 Orphan Transcription Factor Family AT5G61850 66.7 1.7e-124 443.0
Bda15g00277 . 1 379 Orphan Transcription Factor Family AT5G61850 64.1 1.4e-123 439.9
Bda03g00975 . 1 161 Orphan Transcription Factor Family AT1G06040 66.7 5.3e-56 214.2
Bda05g00809 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.5e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17151 PF17538 C_LFY_FLO 2.20E-108 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00277 Bda_Chr15 FPKM 28.665182 33.988152 2.241678 2.288719 19.664551 19.513817 17.806379 0.0 0.101445