Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00282 ATGGGTGGGAATTCTCCATGCGCGTCCTGTAAGCTTTTGAGAAGACGATGCACAAAGGAATGTATCTTCGCCCCTTATTTTCCCTCAGACGACCCTCATAAGTTCGCCATTGTTCACAAGGTTTTTGGAGCTAGCAATATCAGCAAAATGTTGCAGGAGCTTCCAGTTCATCAGAGAGCAGATGCTGTGAGCAGTCTAGTTTATGAAGCAAATGCAAGAGTGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTACCTCCAAACCCAGGTTTCTCAGCTTGAAATGGAACTTGCAGTGGCTCAAGCTGAGATTCTATGCATCCAAATGCAGCAAGAGCCAATGGCTGCTTTGCCAAGTAGCTCCCCATTATACCCAGATGAGAAGTCTTATAGTGTTCTCCCAAACAATCTCCCTCACTACCTCAATTTTGCCTCTTCGAATACTGTAATTCTTTGA 462 45.24 MGGNSPCASCKLLRRRCTKECIFAPYFPSDDPHKFAIVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLEMELAVAQAEILCIQMQQEPMAALPSSSPLYPDEKSYSVLPNNLPHYLNFASSNTVIL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5610058 5610607 + Bda012085.1 Bda15g00282 21977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00282 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 127 - -
Bda15g00282 153 Coils Coil 85 105 - -
Bda15g00282 153 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bda15g00282 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 127 - -
Bda15g00282 153 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00229 Bda-Chr8:2288572 Bda15g00282 Bda-Chr15:5610058 1.52E-39 dispersed
Bda14g00338 Bda-Chr14:2427324 Bda15g00282 Bda-Chr15:5610058 2.32E-48 dispersed
Bda15g00282 Bda-Chr15:5610058 Bda15g00546 Bda-Chr15:8519291 1.52E-48 dispersed
Bda07g00873 Bda-Chr7:10197152 Bda15g00282 Bda-Chr15:5610058 4.30E-62 transposed
Bda07g01858 Bda-Chr7:35992554 Bda15g00282 Bda-Chr15:5610058 2.14E-38 transposed
Bda14g00236 Bda-Chr14:1600223 Bda15g00282 Bda-Chr15:5610058 7.26E-100 transposed
Bda14g00213 Bda-Chr14:1466564 Bda15g00282 Bda-Chr15:5610058 2.49E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17154 PF03195 LOB 1.20E-42 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00282 - - pvy:116106077 251.906