Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda15g00342 | ATGGCGAATTGTTGGTGGACTGGAAATGGCGCCATGAAAGGCAGGAGCCCTTTGTCATCTCCGCCGTCTCTTCACCTGAGAAACCCAGAGGAAGATCATACCGAAAGGAGCCGATTTGGAAGCAGAAGAGAGCAAGAATTCATGGATATGAACCATAGCAACAATAACACAACTCTCACAAATAATAGCACGAAGAAGCCAATTCTTGCAGAGAACGAAGGCAATCGAGATTTTGATCCACATACTGAAAATCCAAACTCCGGCGACCAAGAAAGTATTGAACCAGGCCCTGGAAGCTCCAACGGCCGGCCTCGCGGCCGACCATCCGGGTCTAAGAACAAGCCAAAACCGCCGATTGTGATTACCAAAGAGAGCCCCAATACCCTCCGAAGCCATGTGTTGGAAATCAGCAGCGGCAGCGACATAGCGGAGAGCATAGCCACCTTCTCTCAACGCCGACAAAGAGGAGTCTCCGTTCTAAGTGGCAATGGCGTCGTCACCAACGTTACCCTCCGGCAACCCTCTGCGCCTAGTGGAGTCCTCAATCTCCATGGAAGCTTCGAGATCTTGACTCTCACCGGCGCTTTTTTCCCAGCCCCATCACCTCCTGGATCTTCTGGGCTGACTATTTACTTAGCAGGTGGGCAAGGTCAAGTACTTGGTGGCTCGGTGGTGGGCTCTCTAATGGCGGCCGGGCCAGTGATGGTGATTGTAGCAACGTTCACAAATGCGATATATGAGCGATTACCGCTGGAGGATCAGGTTGGAACTGGAAGTGAGCAACAAATCATGCAAGTAGAGCTGCAATCAGGCAGAGGCAGTTCAGATTCTCATGATGTCGGCGAGCAAGTTTCGACGACGCCGATGTATAATCTGCCTCCTAATTTGCTACCCAATGGTCAAAATCAGATCCCCCATGATTTGTTTTGGGGTTCTCCTCGCCCTCCATCTTCCTACTAA | 960 | 51.15 | MANCWWTGNGAMKGRSPLSSPPSLHLRNPEEDHTERSRFGSRREQEFMDMNHSNNNTTLTNNSTKKPILAENEGNRDFDPHTENPNSGDQESIEPGPGSSNGRPRGRPSGSKNKPKPPIVITKESPNTLRSHVLEISSGSDIAESIATFSQRRQRGVSVLSGNGVVTNVTLRQPSAPSGVLNLHGSFEILTLTGAFFPAPSPPGSSGLTIYLAGGQGQVLGGSVVGSLMAAGPVMVIVATFTNAIYERLPLEDQVGTGSEQQIMQVELQSGRGSSDSHDVGEQVSTTPMYNLPPNLLPNGQNQIPHDLFWGSPRPPSSY | 319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 6271137 | 6272096 | + | Bda012150.1 | Bda15g00342 | 22037 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda15g00342 | 319 | CDD | DUF296 | 130 | 241 | IPR005175 | - | |
| Bda15g00342 | 319 | ProSiteProfiles | PPC domain profile profile. | 126 | 263 | IPR005175 | - | |
| Bda15g00342 | 319 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 126 | 253 | - | - | |
| Bda15g00342 | 319 | MobiDBLite | consensus disorder prediction | 1 | 127 | - | - | |
| Bda15g00342 | 319 | MobiDBLite | consensus disorder prediction | 26 | 49 | - | - | |
| Bda15g00342 | 319 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 31 | 319 | IPR014476 | GO:0003680 | |
| Bda15g00342 | 319 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 130 | 243 | IPR005175 | - | |
| Bda15g00342 | 319 | MobiDBLite | consensus disorder prediction | 50 | 69 | - | - | |
| Bda15g00342 | 319 | MobiDBLite | consensus disorder prediction | 70 | 84 | - | - | |
| Bda15g00342 | 319 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 31 | 319 | - | - | |
| Bda15g00342 | 319 | Gene3D | - | 129 | 262 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00846 | Bda-Chr3:7311081 | Bda15g00342 | Bda-Chr15:6271137 | 5.64E-86 | dispersed | |
| Bda07g00512 | Bda-Chr7:6538506 | Bda15g00342 | Bda-Chr15:6271137 | 8.85E-77 | dispersed | |
| Bda08g00269 | Bda-Chr8:2778593 | Bda15g00342 | Bda-Chr15:6271137 | 2.85E-85 | dispersed | |
| Bda11g00297 | Bda-Chr11:3364528 | Bda15g00342 | Bda-Chr15:6271137 | 3.43E-76 | dispersed | |
| Bda13g00078 | Bda-Chr13:999355 | Bda15g00342 | Bda-Chr15:6271137 | 2.00E-64 | dispersed | |
| Bda13g00424 | Bda-Chr13:5179679 | Bda15g00342 | Bda-Chr15:6271137 | 1.19E-73 | dispersed | |
| Bda13g00442 | Bda-Chr13:5389803 | Bda15g00342 | Bda-Chr15:6271137 | 6.33E-43 | dispersed | |
| Bda15g00752 | Bda-Chr15:11110255 | Bda15g00342 | Bda-Chr15:6271137 | 6.11E-22 | dispersed | |
| Bda14g00285 | Bda-Chr14:1937780 | Bda15g00342 | Bda-Chr15:6271137 | 1.24E-118 | wgd | |
| Bda14g00144 | Bda-Chr14:991209 | Bda15g00342 | Bda-Chr15:6271137 | 1.18E-180 | wgd | |
| Bda15g00235 | Bda-Chr15:5005579 | Bda15g00342 | Bda-Chr15:6271137 | 2.00E-17 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda15g00342 | - | - | qsu:112039774 | 349.362 |