Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda15g00357 | ATGGCTGATGCTGAGGACATTCAACCTCTTGTTTGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCAGGAGATGATGCTCCCCGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACTGGTGTTATGGTTGGTATGGGTCAGAAAGATGCATATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACTTTCTATAATGAACTCCGAGTGGCCCCAGAAGAGCACCCAGTGCTCCTAACTGAGGCTCCTCTGAACCCAAAGGCCAATCGTGAGAAAATGACCCAAATTATGTTTGAAACCTTCAATACCCCTGCTATGTATGTAGCCATCCAAGCTGTTCTTTCACTGTATGCCAGTGGCCGTACAACTGGTATTGTGTTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCAATCTACGAAGGATATGCTCTTCCGCATGCCATCCTTCGTCTTGACCTGGCTGGGCGTGATCTCACTGATAACTTAATGAAAATTCTCACTGAGCGTGGGTACTCTTTTACTACCACAGCTGAGCGTGAAATCGTGAGGGATATGAAGGAAAAGTTGGCATATATTGCTCTTGACTATGAGCAGGAGATGGAAACTGCCAAGACTAGCTCATCAGTTGAGAAGAGCTATGAGTTACCCGACGGGCAGGTCATCACCATTGGTGCTGAGCGCTTCCGATGCCCAGAAGTTCTTTTCCAGCCATCAATGATTGGAATGGAAGCAGCAGGCATTCATGAAACCACTTATAATTCCATCATGAAGTGTGATGTGGATATCAGGAAAGACCTTTATGGAAACATTGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAAATTTCCGCTCTTGCCCCTAGCAGCATGAAGATTAAGGTCGTGGCACCACCAGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCTTTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGACGAATCTGGGCCGTCAATTGTGCATAGGAAGTGCTTCTAA | 1134 | 46.38 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 6440329 | 6441955 | - | Bda012168.1 | Bda15g00357 | 22052 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda15g00357 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Bda15g00357 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Bda15g00357 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Bda15g00357 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Bda15g00357 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Bda15g00357 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Bda15g00357 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Bda15g00357 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Bda15g00357 | 377 | PANTHER | ACTIN-97 | 1 | 376 | - | - | |
| Bda15g00357 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g00128 | Bda-Chr14:873558 | Bda15g00357 | Bda-Chr15:6440329 | 0 | dispersed | |
| Bda04g00339 | Bda-Chr4:48461589 | Bda15g00357 | Bda-Chr15:6440329 | 0 | transposed | |
| Bda06g00486 | Bda-Chr6:6880846 | Bda15g00357 | Bda-Chr15:6440329 | 2.68E-83 | transposed | |
| Bda11g01374 | Bda-Chr11:16934926 | Bda15g00357 | Bda-Chr15:6440329 | 0 | transposed | |
| Bda05g00455 | Bda-Chr5:50845297 | Bda15g00357 | Bda-Chr15:6440329 | 1.22E-69 | transposed | |
| Bda05g00660 | Bda-Chr5:54948986 | Bda15g00357 | Bda-Chr15:6440329 | 8.73E-42 | transposed | |
| Bda10g00975 | Bda-Chr10:44008815 | Bda15g00357 | Bda-Chr15:6440329 | 4.38E-65 | transposed | |
| Bda12g00453 | Bda-Chr12:5600631 | Bda15g00357 | Bda-Chr15:6440329 | 2.38E-112 | transposed | |
| Bda15g00349 | Bda-Chr15:6357586 | Bda15g00357 | Bda-Chr15:6440329 | 0 | wgd | |
| Bda15g00357 | Bda-Chr15:6440329 | Bda09g01504 | Bda-Chr9:46817275 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda15g00357 | K10355 | - | csv:101220611 | 755.747 |