Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda15g00357 | ATGGCTGATGCTGAGGACATTCAACCTCTTGTTTGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCAGGAGATGATGCTCCCCGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACTGGTGTTATGGTTGGTATGGGTCAGAAAGATGCATATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACTTTCTATAATGAACTCCGAGTGGCCCCAGAAGAGCACCCAGTGCTCCTAACTGAGGCTCCTCTGAACCCAAAGGCCAATCGTGAGAAAATGACCCAAATTATGTTTGAAACCTTCAATACCCCTGCTATGTATGTAGCCATCCAAGCTGTTCTTTCACTGTATGCCAGTGGCCGTACAACTGGTATTGTGTTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCAATCTACGAAGGATATGCTCTTCCGCATGCCATCCTTCGTCTTGACCTGGCTGGGCGTGATCTCACTGATAACTTAATGAAAATTCTCACTGAGCGTGGGTACTCTTTTACTACCACAGCTGAGCGTGAAATCGTGAGGGATATGAAGGAAAAGTTGGCATATATTGCTCTTGACTATGAGCAGGAGATGGAAACTGCCAAGACTAGCTCATCAGTTGAGAAGAGCTATGAGTTACCCGACGGGCAGGTCATCACCATTGGTGCTGAGCGCTTCCGATGCCCAGAAGTTCTTTTCCAGCCATCAATGATTGGAATGGAAGCAGCAGGCATTCATGAAACCACTTATAATTCCATCATGAAGTGTGATGTGGATATCAGGAAAGACCTTTATGGAAACATTGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAAATTTCCGCTCTTGCCCCTAGCAGCATGAAGATTAAGGTCGTGGCACCACCAGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCTTTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGACGAATCTGGGCCGTCAATTGTGCATAGGAAGTGCTTCTAA | 1134 | 46.38 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 6440329 | 6441955 | - | Bda012168.1 | Bda15g00357 | 22052 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda15g00357 | 377 | Pfam | Actin | 5 | 377 | IPR004000 | - | |
| Bda15g00357 | 377 | SUPERFAMILY | Actin-like ATPase domain | 149 | 377 | IPR043129 | - | |
| Bda15g00357 | 377 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Bda15g00357 | 377 | SMART | actin_3 | 7 | 377 | IPR004000 | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins signature 2. | 358 | 366 | IPR004001 | - | |
| Bda15g00357 | 377 | Gene3D | - | 140 | 340 | - | - | |
| Bda15g00357 | 377 | Gene3D | - | 10 | 371 | - | - | |
| Bda15g00357 | 377 | PANTHER | ACTIN | 1 | 376 | IPR004000 | - | |
| Bda15g00357 | 377 | Gene3D | Actin; Chain A, domain 4 | 182 | 273 | - | - | |
| Bda15g00357 | 377 | PANTHER | ACTIN-97 | 1 | 376 | - | - | |
| Bda15g00357 | 377 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Bda15g00357 | 377 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 238 | 254 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Bda15g00357 | 377 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda15g00357 | K10355 | ACTF; actin, other eukaryote | - | csv:101220611 | 755.747 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda14g00128 | Bda-Chr14:873558 | Bda15g00357 | Bda-Chr15:6440329 | 0 | dispersed | |
| Bda04g00339 | Bda-Chr4:48461589 | Bda15g00357 | Bda-Chr15:6440329 | 0 | transposed | |
| Bda06g00486 | Bda-Chr6:6880846 | Bda15g00357 | Bda-Chr15:6440329 | 2.68E-83 | transposed | |
| Bda11g01374 | Bda-Chr11:16934926 | Bda15g00357 | Bda-Chr15:6440329 | 0 | transposed | |
| Bda05g00455 | Bda-Chr5:50845297 | Bda15g00357 | Bda-Chr15:6440329 | 1.22E-69 | transposed | |
| Bda05g00660 | Bda-Chr5:54948986 | Bda15g00357 | Bda-Chr15:6440329 | 8.73E-42 | transposed | |
| Bda10g00975 | Bda-Chr10:44008815 | Bda15g00357 | Bda-Chr15:6440329 | 4.38E-65 | transposed | |
| Bda12g00453 | Bda-Chr12:5600631 | Bda15g00357 | Bda-Chr15:6440329 | 2.38E-112 | transposed | |
| Bda15g00349 | Bda-Chr15:6357586 | Bda15g00357 | Bda-Chr15:6440329 | 0 | wgd | |
| Bda15g00357 | Bda-Chr15:6440329 | Bda09g01504 | Bda-Chr9:46817275 | 0 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi13g295 | Blo04g00108 | . | . | . | . | . | . | . | Cmo04g00222 | Cmo04g01263 | Cma04g01189 | Cma04g00220 | Car04g01093 | . | . | . | Cpe01g00187 | . | . | . | . | . | . | . | Cla07g00303 | Cam07g0320 | Cec07g0364 | Cco07g0325 | Clacu07g0312 | Cmu07g0369 | Cre07g0679 | . | . | . | . | Lsi03g00412 | . | Chy10g00547 | Cme10g00888 | . | . | . | Bda15g00357 | . | . | . | . | . | . | Cmo15g00397 | . | Cma15g00386 | . | Car15g00367 | Cpe01g01096 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi04g00880 | Csa05g00706 | . | . |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT2G37620 | 96.3 | 7.7e-214 | 739.6 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT2G37620 | 96.3 | 7.7e-214 | 739.6 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT2G37620 | 96.3 | 7.7e-214 | 739.6 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT2G37620 | 95.8 | 7.7e-214 | 739.6 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT2G37620 | 95.8 | 1.7e-213 | 738.4 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT2G37620 | 96.2 | 2.3e-189 | 658.3 | |
| Bda09g01504 | . | 1 | 309 | Cytoskeleton Gene Families | AT2G37620 | 96.1 | 6.0e-174 | 607.1 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT2G37620 | 96.2 | 7.8e-174 | 606.7 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G59370 | 96.3 | 2.9e-213 | 737.6 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G59370 | 96.3 | 2.9e-213 | 737.6 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G59370 | 96.3 | 2.9e-213 | 737.6 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G59370 | 95.2 | 2.1e-211 | 731.5 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G59370 | 94.7 | 2.3e-210 | 728.0 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT5G59370 | 96.2 | 9.5e-188 | 652.9 | |
| Bda09g01504 | . | 1 | 308 | Cytoskeleton Gene Families | AT5G59370 | 97.1 | 1.3e-173 | 605.9 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT5G59370 | 96.2 | 3.3e-172 | 601.3 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G46520 | 96.6 | 1.3e-213 | 738.8 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G46520 | 96.6 | 1.3e-213 | 738.8 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G46520 | 96.6 | 1.3e-213 | 738.8 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G46520 | 95.5 | 9.4e-212 | 732.6 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G46520 | 95.0 | 1.0e-210 | 729.2 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT3G46520 | 96.4 | 4.3e-188 | 654.1 | |
| Bda09g01504 | . | 1 | 308 | Cytoskeleton Gene Families | AT3G46520 | 97.4 | 6.0e-174 | 607.1 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT3G46520 | 96.5 | 1.5e-172 | 602.4 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G12110 | 97.3 | 1.8e-215 | 745.0 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G12110 | 97.3 | 1.8e-215 | 745.0 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G12110 | 97.3 | 1.8e-215 | 745.0 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G12110 | 95.8 | 2.9e-213 | 737.6 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G12110 | 95.8 | 6.5e-213 | 736.5 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT3G12110 | 96.7 | 7.8e-190 | 659.8 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT3G12110 | 96.8 | 2.7e-174 | 608.2 | |
| Bda09g01504 | . | 1 | 309 | Cytoskeleton Gene Families | AT3G12110 | 96.4 | 2.7e-174 | 608.2 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G18780 | 92.8 | 5.7e-209 | 723.4 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G18780 | 92.8 | 7.5e-209 | 723.0 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G18780 | 92.3 | 2.2e-208 | 721.5 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G18780 | 92.3 | 2.2e-208 | 721.5 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT3G18780 | 92.3 | 2.2e-208 | 721.5 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT3G18780 | 92.9 | 5.8e-185 | 643.7 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT3G18780 | 93.3 | 2.4e-170 | 595.1 | |
| Bda09g01504 | . | 1 | 308 | Cytoskeleton Gene Families | AT3G18780 | 92.2 | 4.4e-169 | 590.9 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT1G49240 | 93.1 | 2.0e-209 | 724.9 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT1G49240 | 93.1 | 2.6e-209 | 724.5 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT1G49240 | 92.6 | 7.5e-209 | 723.0 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT1G49240 | 92.6 | 7.5e-209 | 723.0 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT1G49240 | 92.6 | 7.5e-209 | 723.0 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT1G49240 | 92.9 | 5.8e-185 | 643.7 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT1G49240 | 93.3 | 2.4e-170 | 595.1 | |
| Bda09g01504 | . | 1 | 308 | Cytoskeleton Gene Families | AT1G49240 | 92.5 | 1.5e-169 | 592.4 | |
| Bda04g00339 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 98.7 | 2.6e-217 | 751.1 | |
| Bda11g01374 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 98.7 | 5.7e-217 | 750.0 | |
| Bda15g00349 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 96.3 | 1.3e-213 | 738.8 | |
| Bda15g00357 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 96.3 | 1.3e-213 | 738.8 | |
| Bda14g00128 | . | 1 | 377 | Cytoskeleton Gene Families | AT5G09810 | 96.3 | 1.3e-213 | 738.8 | |
| Bda03g01592 | BCT | 1 | 338 | Cytoskeleton Gene Families | AT5G09810 | 96.4 | 3.0e-189 | 657.9 | |
| Bda09g01504 | . | 1 | 309 | Cytoskeleton Gene Families | AT5G09810 | 96.4 | 7.8e-174 | 606.7 | |
| Bda05g01088 | BCT | 1 | 312 | Cytoskeleton Gene Families | AT5G09810 | 96.5 | 1.0e-173 | 606.3 | |
| Bda01g02037 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT2G19760 | 77.9 | 2.7e-57 | 218.0 | |
| Bda11g01079 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT2G19760 | 77.1 | 7.9e-57 | 216.5 | |
| Bda09g01121 | CCT,ECH | 1 | 133 | Cytoskeleton Gene Families | AT2G19760 | 74.4 | 3.7e-54 | 207.6 | |
| Bda02g00405 | . | 1 | 133 | Cytoskeleton Gene Families | AT2G19760 | 74.4 | 6.3e-54 | 206.8 | |
| Bda01g02037 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT4G29350 | 77.1 | 5.1e-56 | 213.8 | |
| Bda02g00405 | . | 1 | 133 | Cytoskeleton Gene Families | AT4G29350 | 76.7 | 1.5e-55 | 212.2 | |
| Bda09g01121 | CCT,ECH | 1 | 133 | Cytoskeleton Gene Families | AT4G29350 | 75.9 | 3.3e-55 | 211.1 | |
| Bda11g01079 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT4G29350 | 75.6 | 1.3e-54 | 209.1 | |
| Bda01g02037 | BCT,CCT,ECH | 1 | 87 | Cytoskeleton Gene Families | AT5G56600 | 79.3 | 2.0e-37 | 151.8 | |
| Bda09g01121 | CCT,ECH | 1 | 133 | Cytoskeleton Gene Families | AT4G29340 | 79.1 | 3.2e-61 | 231.1 | |
| Bda02g00405 | . | 1 | 133 | Cytoskeleton Gene Families | AT4G29340 | 79.1 | 1.6e-60 | 228.8 | |
| Bda01g02037 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT4G29340 | 75.4 | 2.8e-57 | 218.0 | |
| Bda11g01079 | BCT,CCT,ECH | 1 | 131 | Cytoskeleton Gene Families | AT4G29340 | 71.6 | 7.6e-55 | 209.9 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000079 | 8 | 8 | 7 | 8 | 6 | 8 | 16 | 8 | 8 | 7 | 8 | 8 | 15 | 7 | 7 | 14 | 8 | 15 | 16 | 8 | 7 | 7 | 6 | 8 | 8 | 8 | 7 | 14 | 15 | 6 | 276 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Bda15g00357 | Bda_Chr15 | FPKM | 3.460317 | 2.315611 | 1.33412 | 0.769672 | 6.702445 | 4.15926 | 5.292158 | 0.471837 | 0.571879 |