Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda15g00376 | ATGATGGAGGCTCCGCTGAGTCCTGCGGGAGGGAGTCACGAAAGTGGGGGAGATCGGAGTCCGAAAGCCGGAATGCGGGAGCATGATCGATTCCTTCCTATTGCTAATATTAGTCGGATCATGAAGAAGGCCTTGCCTGCCAATGGAAAGATCGCCAAGGACGCTAAGGATACCGTCCAGGAATGCGTTTCCGAGTTCATCAGCTTCATTACCAGCGAGGCGAGCGACAAATGTCAAAAGGAGAAGAGGAAGACTGTTAATGGCGATGATTTACTGTGGGCAATGGCAACTCTGGGTTTCGAAGATTATATTGTACCCCTTAAAGTGTACTTATCTAGGTACAGGGAGGGTGACACTAAAGGGCAGGCTAGAGGGGGAGATGGATCTGCTAAAAAGGATGGACTTGGAATATTGCCTGGTCAAAATGCTCAGGTTTGTTTTACCTTCCAAAGAATTTCCTAA | 462 | 48.27 | MMEAPLSPAGGSHESGGDRSPKAGMREHDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIVPLKVYLSRYREGDTKGQARGGDGSAKKDGLGILPGQNAQVCFTFQRIS | 153 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 6716276 | 6717271 | + | Bda012191.1 | Bda15g00376 | 22071 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda15g00376 | 153 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Bda15g00376 | 153 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Bda15g00376 | 153 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Bda15g00376 | 153 | Gene3D | Histone, subunit A | 20 | 142 | IPR009072 | GO:0046982 | |
Bda15g00376 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Bda15g00376 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Bda15g00376 | 153 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Bda15g00376 | 153 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 147 | - | - | |
Bda15g00376 | 153 | SUPERFAMILY | Histone-fold | 29 | 122 | IPR009072 | GO:0046982 | |
Bda15g00376 | 153 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 147 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda15g00184 | Bda15g00376 | CCT | |
Bda15g00376 | Bda15g00184 | ECH | |
Bda15g00184 | Bda15g00376 | ECH | |
Bda14g00336 | Bda15g00376 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda14g00336 | Bda-Chr14:2403587 | Bda15g00376 | Bda-Chr15:6716276 | 2.12E-74 | wgd | |
Bda15g00184 | Bda-Chr15:4420974 | Bda15g00376 | Bda-Chr15:6716276 | 1.84E-87 | wgd | |
Bda15g00376 | Bda-Chr15:6716276 | Bda03g00753 | Bda-Chr3:6355371 | 3.10E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17159 | PF00808 | CBFD_NFYB_HMF | 3.70E-28 | CL0012 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda15g00376 | K08065 | - | cpap:110824235 | 253.447 |