Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bda15g00376	ATGATGGAGGCTCCGCTGAGTCCTGCGGGAGGGAGTCACGAAAGTGGGGGAGATCGGAGTCCGAAAGCCGGAATGCGGGAGCATGATCGATTCCTTCCTATTGCTAATATTAGTCGGATCATGAAGAAGGCCTTGCCTGCCAATGGAAAGATCGCCAAGGACGCTAAGGATACCGTCCAGGAATGCGTTTCCGAGTTCATCAGCTTCATTACCAGCGAGGCGAGCGACAAATGTCAAAAGGAGAAGAGGAAGACTGTTAATGGCGATGATTTACTGTGGGCAATGGCAACTCTGGGTTTCGAAGATTATATTGTACCCCTTAAAGTGTACTTATCTAGGTACAGGGAGGGTGACACTAAAGGGCAGGCTAGAGGGGGAGATGGATCTGCTAAAAAGGATGGACTTGGAATATTGCCTGGTCAAAATGCTCAGGTTTGTTTTACCTTCCAAAGAATTTCCTAA	462	48.27	MMEAPLSPAGGSHESGGDRSPKAGMREHDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIVPLKVYLSRYREGDTKGQARGGDGSAKKDGLGILPGQNAQVCFTFQRIS	153

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
15	6716276	6717271	+	Bda012191.1	Bda15g00376	22071

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bda15g00376	153	MobiDBLite	consensus disorder prediction	1	25	-	-
	Bda15g00376	153	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	31	95	IPR003958	-
	Bda15g00376	153	ProSitePatterns	NF-YB/HAP3 subunit signature.	62	78	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Bda15g00376	153	Gene3D	Histone, subunit A	20	142	IPR009072	GO:0046982
	Bda15g00376	153	PRINTS	CCAAT-binding transcription factor subunit A signature	97	115	-	-
	Bda15g00376	153	PRINTS	CCAAT-binding transcription factor subunit A signature	59	77	-	-
	Bda15g00376	153	PRINTS	CCAAT-binding transcription factor subunit A signature	78	96	-	-
	Bda15g00376	153	PANTHER	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED	1	147	-	-
	Bda15g00376	153	SUPERFAMILY	Histone-fold	29	122	IPR009072	GO:0046982
	Bda15g00376	153	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	1	147	IPR027113	GO:0001228\|GO:0006355\|GO:0016602

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bda15g00184	Bda15g00376	CCT
	Bda15g00376	Bda15g00184	ECH
	Bda15g00184	Bda15g00376	ECH
	Bda14g00336	Bda15g00376	BCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bda14g00336	Bda-Chr14:2403587	Bda15g00376	Bda-Chr15:6716276	2.12E-74	wgd
	Bda15g00184	Bda-Chr15:4420974	Bda15g00376	Bda-Chr15:6716276	1.84E-87	wgd
	Bda15g00376	Bda-Chr15:6716276	Bda03g00753	Bda-Chr3:6355371	3.10E-72	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	17159	PF00808	CBFD_NFYB_HMF	3.70E-28	CL0012	Bda	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bda15g00376	K08065		-	cpap:110824235	253.447