Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00376 ATGATGGAGGCTCCGCTGAGTCCTGCGGGAGGGAGTCACGAAAGTGGGGGAGATCGGAGTCCGAAAGCCGGAATGCGGGAGCATGATCGATTCCTTCCTATTGCTAATATTAGTCGGATCATGAAGAAGGCCTTGCCTGCCAATGGAAAGATCGCCAAGGACGCTAAGGATACCGTCCAGGAATGCGTTTCCGAGTTCATCAGCTTCATTACCAGCGAGGCGAGCGACAAATGTCAAAAGGAGAAGAGGAAGACTGTTAATGGCGATGATTTACTGTGGGCAATGGCAACTCTGGGTTTCGAAGATTATATTGTACCCCTTAAAGTGTACTTATCTAGGTACAGGGAGGGTGACACTAAAGGGCAGGCTAGAGGGGGAGATGGATCTGCTAAAAAGGATGGACTTGGAATATTGCCTGGTCAAAATGCTCAGGTTTGTTTTACCTTCCAAAGAATTTCCTAA 462 48.27 MMEAPLSPAGGSHESGGDRSPKAGMREHDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIVPLKVYLSRYREGDTKGQARGGDGSAKKDGLGILPGQNAQVCFTFQRIS 153
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
15 6716276 6717271 + Bda012191.1 Bda15g00376 22071
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00376 153 MobiDBLite consensus disorder prediction 1 25 - -
Bda15g00376 153 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bda15g00376 153 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bda15g00376 153 Gene3D Histone, subunit A 20 142 IPR009072 GO:0046982
Bda15g00376 153 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bda15g00376 153 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bda15g00376 153 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bda15g00376 153 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 147 - -
Bda15g00376 153 SUPERFAMILY Histone-fold 29 122 IPR009072 GO:0046982
Bda15g00376 153 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00336 Bda-Chr14:2403587 Bda15g00376 Bda-Chr15:6716276 2.12E-74 wgd
Bda15g00184 Bda-Chr15:4420974 Bda15g00376 Bda-Chr15:6716276 1.84E-87 wgd
Bda15g00376 Bda-Chr15:6716276 Bda03g00753 Bda-Chr3:6355371 3.10E-72 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17159 PF00808 CBFD_NFYB_HMF 3.70E-28 CL0012 Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00376 K08065 - cpap:110824235 253.447