Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00380 ATGGGTAAGGAGAAGGTTCACATCAACATTGTGGTCATCGGCCATGTCGACTCCGGGAAGTCCACCACCACCGGCCACTTAATCTACAAGCTTGGTGGCATTGACAAGCGTGTGATTGAGCGATTTGAGAAAGAAGCTGCTGAGATGAACAAGAGATCATTCAAGTACGCATGGGTGTTGGACAAGCTTAAGGCCGAGCGTGAGAGGGGTATCACTATTGATATTGCCTTGTGGAAGTTTGAAACCACTAAATACTACTGCACTGTCATTGATGCCCCTGGACATCGAGACTTCATCAAAAACATGATTACTGGAACTTCGCAAGCTGATTGTGCTGTTCTTATCATTGATTCTACGACTGGAGGTTTCGAAGCTGGTATTTCCAAGGATGGTCAAACTCGTGAGCATGCTCTTCTCGCCTTCACTCTTGGAGTGAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCTACAACCCCGAAATATTCTAAGGCGAGGTACGATGAAATTGTGAAGGAAGTCTCTTCCTACTTGAAGAAAGTTGGTTATAACCCCGATAAAATTCCTTTTGTCCCCATTTCTGGATTTGAAGGCGACAACATGATTGAGAGGTCTACGAACCTTGACTGGTACAAGGGTCCGACTCTTCTCGATGCTCTTGACTTGATCCTGGAACCCAAGAGACCCACGGACAAGCCTCTCAGGCTCCCGCTTCAAGATGTTTACAAGATTGGTGGTATTGGTACCGTTCCGGTGGGACGGGTTGAGACTGGTGTTCTCAAGCCTGGTATGGTTGTTACTTTTGGCCCAACTGGTCTGACTACTGAGGTCAAGTCTGTTGAGATGCACCATGAGGCTCTTCAAGAAGCTCTCCCGGGCGACAATGTCGGTTTCAACGTTAAGAATGTTGCAGTGAAGGATCTCAAGCGTGGCTTTGTTGCTTCTAATTCTAAGGACGATCCTGCTAGGGAAGCGGCCAACTTCACCTCCCAAGTTATCATTATGAACCACCCTGGCCAGATTGGAAATGGTTATGCCCCTGTTCTTGATTGTCACACCTCGCACATTGCTGTCAAATTCGGAGAGATACTGACCAAGATTGACAGACGATCTGGAAAGGAGCTCGAGAAGGAGCCAAAGTTCTTGAAGAATGGCGATGCTGGGTTTGTCAAGATGCTTCCCACCAAACCCATGGTTGTGGAGACCTTCTCTGAGTATCCCCCACTCGGCCGTTTTGCTGTCCGAGACATGCGGCAAACGGTGGCCGTCGGTGTCATCAAGAGCGTCGAGAAGAAGGATCCATCTGGTGCAAAGGTCACAAAGTCTGCTGCCAAGAAAACTGGCAAGTGA 1350 48.07 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDLILEPKRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAGFVKMLPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKTGK 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6732927 6734363 + Bda012195.1 Bda15g00380 22075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00380 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bda15g00380 449 Pfam Elongation factor Tu C-terminal domain 322 429 IPR004160 -
Bda15g00380 449 Gene3D - 1 226 IPR027417 -
Bda15g00380 449 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 429 IPR009001 -
Bda15g00380 449 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 433 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda15g00380 449 Pfam Elongation factor Tu GTP binding domain 6 224 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 PANTHER TRANSLATION FACTOR 1 447 - -
Bda15g00380 449 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda15g00380 449 CDD EF1_alpha_II 230 320 - -
Bda15g00380 449 Gene3D Translation factors 229 316 - -
Bda15g00380 449 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 447 - -
Bda15g00380 449 CDD EF1_alpha_III 323 426 - -
Bda15g00380 449 Hamap Elongation factor Tu [tuf]. 2 432 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda15g00380 449 CDD EF1_alpha 9 227 - -
Bda15g00380 449 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Bda15g00380 449 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 Gene3D Translation factors 323 430 - -
Bda15g00380 449 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda15g00380 449 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00704 Bda-Chr1:34325974 Bda15g00380 Bda-Chr15:6732927 7.05E-85 dispersed
Bda02g00775 Bda-Chr2:48461320 Bda15g00380 Bda-Chr15:6732927 0 dispersed
Bda11g00347 Bda-Chr11:3873899 Bda15g00380 Bda-Chr15:6732927 0 dispersed
Bda11g01780 Bda-Chr11:52655314 Bda15g00380 Bda-Chr15:6732927 2.08E-86 dispersed
Bda11g01644 Bda-Chr11:50442640 Bda15g00380 Bda-Chr15:6732927 8.62E-46 transposed
Bda14g00079 Bda-Chr14:613788 Bda15g00380 Bda-Chr15:6732927 1.70E-56 wgd
Bda15g00380 Bda-Chr15:6732927 Bda02g00774 Bda-Chr2:48458204 0 wgd
Bda15g00380 Bda-Chr15:6732927 Bda09g01471 Bda-Chr9:46517877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00380 K03231 - dct:110098189 892.878