Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00404 ATGCTGAGGATGGAAAAGGATTTCGATACCAAGTTGAGAATTCAGAGGAAATCTTCTAATGGAGGGAACGTTCAAAGATCTAAGAGCTTTGCTTTTCGAGCTCCACAGGAGAGTTTCACGATTCAGGATTTTGAATTGGGCAAAATCTATGGCGTTGGTTCTTATTCCAAGGTTGTGAGGGCGAAGAAGAAGGATACAGGAACAATCTATGCAATGAAGATAATGGACAAAAAGTTCATCACCAAAGAAAACAAAACTGCTTATGTCAAGCTAGAACGCATTGTGCTCGATCAGTTGGATCATCCCGGCATCGTGCGACTATTTTTCACGTTTCAAGACACCCTTTCGCTCTACATGGCTCTTGAATCCTGCGAAGGTGGAGAACTTTTTGACCAAATAAACAGGAAAGGTCGCTTGCCAGAAGATGAAGCTCGGTTCTATGCTGCCGAAGTTGTGGATGCTCTTGAATATATACATAGTATGGGACTGATTCACCGGGATATTAAGCCCGAAAATTTGCTTCTCACTGCTGATGGACATATTAAAATTGCTGATTTTGGAAGCGTGAAGCCTATGCAGGATAGTCGAATTACCGTTCTTCCAAATGCAGCATCAGATGACAAAGCTTGTACATTTGTGGGGACAGCAGCATATGTTCCTCCAGAAGTCCTCAATTCGTCCCCTGCAACTTTTGGAAATGACCTCTGGGCACTTGGCTGCACCCTGTACCAGATGCTTTCAGGCACTTCTCCTTTTAAAGATGCAAGTGAATGGCTCATTTTCCAAAGAATTATAGCTAGAGAGATAAGGTTTCCAAATTACTTTTCGGAGGAAGCTAAAGATCTTATCGACCGCTTGCTGGATATTGATCCCAGCCGCAGACCCGGTGCAGGAGCTGAAGGTTATGGTGTACTGAAGATGCATCCCTTTTTTGAGGGAGTGGATTGGAAGAATATTAGGGCTCAAAAACCATCAAAAGTTGCTTTGGTAAGACTTCATATTCCTCTTGAAAAAATCCACCAGGCTGTGAATACTGATTTTTCTCATTCTGTGAGTCTTCAGGTCTCTTCAGGCGAAGGTAGTGGTAAAGTTCATGATTCTTCATGGAACCCTGCCCATGGTGGGGATGGTGCAGGCGGAAATTATGATGGCCTTGGATCATTGTCCGAAGCCTCCGGACATATCACTAGGCTTGCCTCGATCGACTCATTCGATTCTAAGTGGCAACAGTTCCTTGAAGCTGGAGAATCAGTCCTGATGATCTCAATGGTGAAGAAAATTCAGAAGCTTTCAAGCAAAAAAGTGCAGCTTATCCTCACCAATAAACCAAAACTAATTTATGTAAATCCTTCCAAGCTGAATGTAAAAAGGAACATAACATGGTCTGACAATCGAAACGACTTGAACGTCCAAGTCACGAGTCCTTCCCAATTCAAGATCTGCACGCCGAAAAAGATCTTATCGTTCGAGGATTCAAAGCAGAGAGGATGGCAGTGGAAGAAGGCGATCGAGACGCTTCAGAGCCGG 1527 43.68 MLRMEKDFDTKLRIQRKSSNGGNVQRSKSFAFRAPQESFTIQDFELGKIYGVGSYSKVVRAKKKDTGTIYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGIVRLFFTFQDTLSLYMALESCEGGELFDQINRKGRLPEDEARFYAAEVVDALEYIHSMGLIHRDIKPENLLLTADGHIKIADFGSVKPMQDSRITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIAREIRFPNYFSEEAKDLIDRLLDIDPSRRPGAGAEGYGVLKMHPFFEGVDWKNIRAQKPSKVALVRLHIPLEKIHQAVNTDFSHSVSLQVSSGEGSGKVHDSSWNPAHGGDGAGGNYDGLGSLSEASGHITRLASIDSFDSKWQQFLEAGESVLMISMVKKIQKLSSKKVQLILTNKPKLIYVNPSKLNVKRNITWSDNRNDLNVQVTSPSQFKICTPKKILSFEDSKQRGWQWKKAIETLQSR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6952390 6959531 - Bda033295 Bda15g00404 22099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00404 509 CDD STKc_PDK1 42 311 IPR039046 GO:0004674
Bda15g00404 509 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Bda15g00404 509 Gene3D Transferase(Phosphotransferase) domain 1 128 323 - -
Bda15g00404 509 Pfam PH domain 406 507 IPR033931 -
Bda15g00404 509 SUPERFAMILY Protein kinase-like (PK-like) 27 344 IPR011009 -
Bda15g00404 509 Pfam Protein kinase domain 46 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda15g00404 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Bda15g00404 509 ProSiteProfiles Protein kinase domain profile. 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda15g00404 509 PANTHER 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1 18 505 - -
Bda15g00404 509 SMART serkin_6 44 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda15g00404 509 SUPERFAMILY PH domain-like 305 508 - -
Bda15g00404 509 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 505 - -
Bda15g00404 509 Gene3D - 387 509 IPR011993 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00404 Bda-Chr15:6952390 Bda02g00791 Bda-Chr2:48624228 3.27E-51 dispersed
Bda15g00404 Bda-Chr15:6952390 Bda09g01486 Bda-Chr9:46684330 3.08E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70096 PF00069 Pkinase 6.20E-67 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00404 K06276 - twl:119990053 813.142