Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda15g00463 | ATGTCGTTCCGAAGCATTGTTCAGGATGTAAGAGACTATACAGGGAGTTTATCTAGACGGAGGTTTGAGTTCAGGCTGACCTCTCATGGCAGAGGGAAGTCACACGGGTCATTGCACGATTTAGATAGTCAGCAGAATGTGGTTCAGAGCAGTTGTTGGGCGACCCTACCACCTGAACTTCTGTACGATGTCATTCGCAGACTAGAAGAGAGTGAAAGCACTTGGCCTTCTCGAAAACATGTTGTAGCTTGTGCTGCAGTGTGCCATTCTTGGAGGGTGATGTGCAAAGAAATTGTTAAAAGTCCAGAATTTTGTGGGAAGCTTACATTTCCCGTCTCCCTGAAGCAGCCAGGGCCACGAGACGGAAGCATTCAGTGCTTCATAAGAAGGGATAAATCTAATCTAACATACCGCCTCTTTCTGTGCCTTAGCCCCGCCTTACTAGTCGAAAATGGGAAGTTTCTCCTCTCCGCTAAGCGAATTCGAAAAACTACTAATACAGAGTACATAATCTCTACAAATGCTGATAACATTTCAAGATCAAGCAACACTTTCATTGGAAAGCTGAGGTCAAACTTCCTCGGCACGAAATTCATCATATACGATACACAGCCTCCATATGCTTCGGCGCCCCTCCCTCCTCCTGGGAAAACAAGCAGAAGGTTCTTCACCAAAAAGGTGTCTCCAAAAGTCCCAAGTGCACACTATGACATAGCCCATATAGCATACGAACTAAACGTGCTAGGCACACGTGGCCCTCGGAGAATGCACTGTGTGATGGATTCTATTCCGGCCTCAGCTCTTATTGCAGGAAATACGGTCCCTGGCCAACCAGAGCTCATTACACGATGCCTCGAAGACTCGTTCCGAAGTATGTCATTCTCCAAATCAGTTCATCACTCAACCGAATTTAGTAGTGCAAGATTTTCTGAATTCAGAAGAATTGGTAGCGATGATGAGACTGTCGAAACGAGACCCTTGGTGCTTAAAAATAAGCCCCCACGATGGCATGAACAATTGCAATGTTGGTGCCTGAATTTCCGAGGGCGTGTGACTGTGGCGTCGGTCAAGAACTTTCAGCTGATTGCTGCTGCACAGCCGGCTGGGGCACCGACGCCATCCCAGCCAACTCCGCCTGAGCATGACAAGATAATTCTGCAGTTTGGTAAGGTGGGAAAAGACATGTTCACCATGGATTACTGCTATCCGCTCTCGGCTTTTCAGGCATTTGCGATCTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG | 1275 | 47.37 | MSFRSIVQDVRDYTGSLSRRRFEFRLTSHGRGKSHGSLHDLDSQQNVVQSSCWATLPPELLYDVIRRLEESESTWPSRKHVVACAAVCHSWRVMCKEIVKSPEFCGKLTFPVSLKQPGPRDGSIQCFIRRDKSNLTYRLFLCLSPALLVENGKFLLSAKRIRKTTNTEYIISTNADNISRSSNTFIGKLRSNFLGTKFIIYDTQPPYASAPLPPPGKTSRRFFTKKVSPKVPSAHYDIAHIAYELNVLGTRGPRRMHCVMDSIPASALIAGNTVPGQPELITRCLEDSFRSMSFSKSVHHSTEFSSARFSEFRRIGSDDETVETRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAGAPTPSQPTPPEHDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACE | 424 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 7706302 | 7708568 | - | Bda012293.1 | Bda15g00463 | 22158 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda15g00463 | 424 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 424 | - | - | |
Bda15g00463 | 424 | ProSitePatterns | Tub family signature 2. | 409 | 424 | IPR018066 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 185 | 209 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 329 | 346 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 235 | 262 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 402 | 424 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 381 | 400 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 169 | 185 | IPR000007 | - | |
Bda15g00463 | 424 | PRINTS | Tubby superfamily signature | 347 | 363 | IPR000007 | - | |
Bda15g00463 | 424 | ProSitePatterns | Tub family signature 1. | 347 | 360 | IPR018066 | - | |
Bda15g00463 | 424 | Pfam | Tub family | 114 | 419 | IPR000007 | - | |
Bda15g00463 | 424 | PANTHER | TUBBY-RELATED | 1 | 424 | - | - | |
Bda15g00463 | 424 | SUPERFAMILY | F-box domain | 46 | 97 | IPR036047 | GO:0005515 | |
Bda15g00463 | 424 | Gene3D | Tubby Protein; Chain A | 112 | 418 | IPR025659 | - | |
Bda15g00463 | 424 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 424 | IPR025659 | - | |
Bda15g00463 | 424 | Pfam | F-box domain | 53 | 99 | IPR001810 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda08g00735 | Bda-Chr8:8827647 | Bda15g00463 | Bda-Chr15:7706302 | 0 | dispersed | |
Bda08g00739 | Bda-Chr8:8908663 | Bda15g00463 | Bda-Chr15:7706302 | 0 | dispersed | |
Bda11g00874 | Bda-Chr11:8595125 | Bda15g00463 | Bda-Chr15:7706302 | 0 | dispersed | |
Bda11g01863 | Bda-Chr11:53727722 | Bda15g00463 | Bda-Chr15:7706302 | 4.21E-150 | dispersed | |
Bda15g00463 | Bda-Chr15:7706302 | Bda03g00391 | Bda-Chr3:3234059 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17168 | PF01167 | Tub | 2.60E-112 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda15g00463 | K19600 | - | jre:109007061 | 710.679 |