Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00463 ATGTCGTTCCGAAGCATTGTTCAGGATGTAAGAGACTATACAGGGAGTTTATCTAGACGGAGGTTTGAGTTCAGGCTGACCTCTCATGGCAGAGGGAAGTCACACGGGTCATTGCACGATTTAGATAGTCAGCAGAATGTGGTTCAGAGCAGTTGTTGGGCGACCCTACCACCTGAACTTCTGTACGATGTCATTCGCAGACTAGAAGAGAGTGAAAGCACTTGGCCTTCTCGAAAACATGTTGTAGCTTGTGCTGCAGTGTGCCATTCTTGGAGGGTGATGTGCAAAGAAATTGTTAAAAGTCCAGAATTTTGTGGGAAGCTTACATTTCCCGTCTCCCTGAAGCAGCCAGGGCCACGAGACGGAAGCATTCAGTGCTTCATAAGAAGGGATAAATCTAATCTAACATACCGCCTCTTTCTGTGCCTTAGCCCCGCCTTACTAGTCGAAAATGGGAAGTTTCTCCTCTCCGCTAAGCGAATTCGAAAAACTACTAATACAGAGTACATAATCTCTACAAATGCTGATAACATTTCAAGATCAAGCAACACTTTCATTGGAAAGCTGAGGTCAAACTTCCTCGGCACGAAATTCATCATATACGATACACAGCCTCCATATGCTTCGGCGCCCCTCCCTCCTCCTGGGAAAACAAGCAGAAGGTTCTTCACCAAAAAGGTGTCTCCAAAAGTCCCAAGTGCACACTATGACATAGCCCATATAGCATACGAACTAAACGTGCTAGGCACACGTGGCCCTCGGAGAATGCACTGTGTGATGGATTCTATTCCGGCCTCAGCTCTTATTGCAGGAAATACGGTCCCTGGCCAACCAGAGCTCATTACACGATGCCTCGAAGACTCGTTCCGAAGTATGTCATTCTCCAAATCAGTTCATCACTCAACCGAATTTAGTAGTGCAAGATTTTCTGAATTCAGAAGAATTGGTAGCGATGATGAGACTGTCGAAACGAGACCCTTGGTGCTTAAAAATAAGCCCCCACGATGGCATGAACAATTGCAATGTTGGTGCCTGAATTTCCGAGGGCGTGTGACTGTGGCGTCGGTCAAGAACTTTCAGCTGATTGCTGCTGCACAGCCGGCTGGGGCACCGACGCCATCCCAGCCAACTCCGCCTGAGCATGACAAGATAATTCTGCAGTTTGGTAAGGTGGGAAAAGACATGTTCACCATGGATTACTGCTATCCGCTCTCGGCTTTTCAGGCATTTGCGATCTGCTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1275 47.37 MSFRSIVQDVRDYTGSLSRRRFEFRLTSHGRGKSHGSLHDLDSQQNVVQSSCWATLPPELLYDVIRRLEESESTWPSRKHVVACAAVCHSWRVMCKEIVKSPEFCGKLTFPVSLKQPGPRDGSIQCFIRRDKSNLTYRLFLCLSPALLVENGKFLLSAKRIRKTTNTEYIISTNADNISRSSNTFIGKLRSNFLGTKFIIYDTQPPYASAPLPPPGKTSRRFFTKKVSPKVPSAHYDIAHIAYELNVLGTRGPRRMHCVMDSIPASALIAGNTVPGQPELITRCLEDSFRSMSFSKSVHHSTEFSSARFSEFRRIGSDDETVETRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAQPAGAPTPSQPTPPEHDKIILQFGKVGKDMFTMDYCYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7706302 7708568 - Bda012293.1 Bda15g00463 22158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00463 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Bda15g00463 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Bda15g00463 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bda15g00463 424 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bda15g00463 424 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bda15g00463 424 Pfam Tub family 114 419 IPR000007 -
Bda15g00463 424 PANTHER TUBBY-RELATED 1 424 - -
Bda15g00463 424 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Bda15g00463 424 Gene3D Tubby Protein; Chain A 112 418 IPR025659 -
Bda15g00463 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Bda15g00463 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00735 Bda-Chr8:8827647 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda08g00739 Bda-Chr8:8908663 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda11g00874 Bda-Chr11:8595125 Bda15g00463 Bda-Chr15:7706302 0 dispersed
Bda11g01863 Bda-Chr11:53727722 Bda15g00463 Bda-Chr15:7706302 4.21E-150 dispersed
Bda15g00463 Bda-Chr15:7706302 Bda03g00391 Bda-Chr3:3234059 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17168 PF01167 Tub 2.60E-112 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00463 K19600 - jre:109007061 710.679