Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00471 ATGGCGAGGAAGACCAAGGGGAGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGCAATCTTCAAGTGACATTCTCAAAGCGACGGCTGGGGCTTTTCAAGAAAGCGAGCGAGCTTTGTACGCTGTGTGGGGTGGAGATCGCAATCATCGTTTTTTCGCCGGGAAAGAAGGTTTTTTCATTCGGGCACCCGAGCGTCGAGACGCTCATCGACCGGTTCCCAATGCGAAACCCTTCGCCAAACTCAGTGACGCTGCGACTCATCGAAGCTCATCGAAAAGTCACTGTACAGGACTTAAATGCTCAACTGACGCAGATGAATAATCAACTGGAGCAGGAGAAGGAGCGGGGGGAGGGCCTCGATAAAATGCGTCGAGATGGACAAATGGGGGAGTGTTGGTGGGAGTGTCCTCTCGAGGAGCTCGAGAAGCCATACCTAGAGCAACTCAAGGTTTCACTAGAAGAGCTCAAGAACAAGGTGGCCAAACAGACCGAAAGCTCACCTCCTCACTACTTCCATGGAAATTCAAGCTTCCAATCAGGAATTATTCCCTATGATTAA 564 50.71 MARKTKGRQKVEMVKMQNESNLQVTFSKRRLGLFKKASELCTLCGVEIAIIVFSPGKKVFSFGHPSVETLIDRFPMRNPSPNSVTLRLIEAHRKVTVQDLNAQLTQMNNQLEQEKERGEGLDKMRRDGQMGECWWECPLEELEKPYLEQLKVSLEELKNKVAKQTESSPPHYFHGNSSFQSGIIPYD 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7897208 7897771 - Bda012301.1 Bda15g00471 22166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00471 187 CDD MADS_MEF2_like 7 74 IPR033896 GO:0000977|GO:0045944
Bda15g00471 187 PANTHER MADS BOX PROTEIN 5 163 - -
Bda15g00471 187 Coils Coil 147 167 - -
Bda15g00471 187 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bda15g00471 187 MobiDBLite consensus disorder prediction 163 187 - -
Bda15g00471 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Gene3D - 85 168 - -
Bda15g00471 187 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 163 - -
Bda15g00471 187 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Coils Coil 94 124 - -
Bda15g00471 187 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00686 Bda-Chr8:7301369 Bda15g00471 Bda-Chr15:7897208 1.26E-28 dispersed
Bda08g00692 Bda-Chr8:7358513 Bda15g00471 Bda-Chr15:7897208 1.35E-27 dispersed
Bda09g00815 Bda-Chr9:16258666 Bda15g00471 Bda-Chr15:7897208 1.63E-38 dispersed
Bda09g00816 Bda-Chr9:16283952 Bda15g00471 Bda-Chr15:7897208 4.36E-43 dispersed
Bda12g00566 Bda-Chr12:9891162 Bda15g00471 Bda-Chr15:7897208 9.73E-35 dispersed
Bda14g01307 Bda-Chr14:14450463 Bda15g00471 Bda-Chr15:7897208 4.41E-27 dispersed
Bda15g00471 Bda-Chr15:7897208 Bda02g00084 Bda-Chr2:3691439 6.39E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17170 PF00319 SRF-TF 2.70E-24 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00471 - - cit:102622898 235.728