Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00471 ATGGCGAGGAAGACCAAGGGGAGGCAAAAGGTGGAGATGGTGAAGATGCAGAACGAGAGCAATCTTCAAGTGACATTCTCAAAGCGACGGCTGGGGCTTTTCAAGAAAGCGAGCGAGCTTTGTACGCTGTGTGGGGTGGAGATCGCAATCATCGTTTTTTCGCCGGGAAAGAAGGTTTTTTCATTCGGGCACCCGAGCGTCGAGACGCTCATCGACCGGTTCCCAATGCGAAACCCTTCGCCAAACTCAGTGACGCTGCGACTCATCGAAGCTCATCGAAAAGTCACTGTACAGGACTTAAATGCTCAACTGACGCAGATGAATAATCAACTGGAGCAGGAGAAGGAGCGGGGGGAGGGCCTCGATAAAATGCGTCGAGATGGACAAATGGGGGAGTGTTGGTGGGAGTGTCCTCTCGAGGAGCTCGAGAAGCCATACCTAGAGCAACTCAAGGTTTCACTAGAAGAGCTCAAGAACAAGGTGGCCAAACAGACCGAAAGCTCACCTCCTCACTACTTCCATGGAAATTCAAGCTTCCAATCAGGAATTATTCCCTATGATTAA 564 50.71 MARKTKGRQKVEMVKMQNESNLQVTFSKRRLGLFKKASELCTLCGVEIAIIVFSPGKKVFSFGHPSVETLIDRFPMRNPSPNSVTLRLIEAHRKVTVQDLNAQLTQMNNQLEQEKERGEGLDKMRRDGQMGECWWECPLEELEKPYLEQLKVSLEELKNKVAKQTESSPPHYFHGNSSFQSGIIPYD 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7897208 7897771 - Bda012301.1 Bda15g00471 22166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00471 187 CDD MADS_MEF2_like 7 74 IPR033896 GO:0000977|GO:0045944
Bda15g00471 187 PANTHER MADS BOX PROTEIN 5 163 - -
Bda15g00471 187 Coils Coil 147 167 - -
Bda15g00471 187 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Gene3D - 18 84 IPR036879 GO:0003677|GO:0046983
Bda15g00471 187 MobiDBLite consensus disorder prediction 163 187 - -
Bda15g00471 187 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Gene3D - 85 168 - -
Bda15g00471 187 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 163 - -
Bda15g00471 187 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Bda15g00471 187 Coils Coil 94 124 - -
Bda15g00471 187 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00471 - - - cit:102622898 235.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda08g00686 Bda-Chr8:7301369 Bda15g00471 Bda-Chr15:7897208 1.26E-28 dispersed
Bda08g00692 Bda-Chr8:7358513 Bda15g00471 Bda-Chr15:7897208 1.35E-27 dispersed
Bda09g00815 Bda-Chr9:16258666 Bda15g00471 Bda-Chr15:7897208 1.63E-38 dispersed
Bda09g00816 Bda-Chr9:16283952 Bda15g00471 Bda-Chr15:7897208 4.36E-43 dispersed
Bda12g00566 Bda-Chr12:9891162 Bda15g00471 Bda-Chr15:7897208 9.73E-35 dispersed
Bda14g01307 Bda-Chr14:14450463 Bda15g00471 Bda-Chr15:7897208 4.41E-27 dispersed
Bda15g00471 Bda-Chr15:7897208 Bda02g00084 Bda-Chr2:3691439 6.39E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g779 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00471 . . . . Bma08g00020 . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02216
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17170 PF00319 SRF-TF 2.70E-24 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00471 Bda_Chr15 FPKM 0.986594 1.010369 0.720175 0.0 3.203279 3.532883 4.046045 6.11853 5.107404