Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00476 ATGGAGACTAACGTCAAGGCTACCCAGCGCATGGCCAAATTAGCTGCTCATTTACGTCCTTCCAATCTCCAGGTTGAGGGAACGTCTGGTCTGGAACCAGTAAATTGCCGCGCGAAGGGTGGTGCCCCGGGTTTCAAAGTGGCTATTCTAGGAGCTGCCGGTGGGATTGGACAGCCTCTTGCTATGCTGATGAAGATGAATCCTCTCGTCTCAGTTCTTCATCTTTACGATGTTGTTAATGCTCCTGGTGTGACTGCTGATGTTAGTCATATGGATACTGGTGCTGTGGTGCGTGGTTTTTTGGGCCAACCACAGCTTGAGAGTGCACTAACGGGGATGGACCTTGTAGTCATACCTGCTGGTGTACCAAGGAAACCTGGAATGACAAGAGATGATCTATTCAACATCAATGCTGGAATTGTCAGGACTCTCTGCGAAGGAATAGCAAAATGCTGTCCTAATGCAATTGTCAACTTAATCAGTAATCCTGTCAATTCAACGGTTGCAATTGCATCAGAAGTCTTCAAGAAAGCTGGAACATATGATCCAAAGAGACTTTTGGGTGTTACGACTTTGGATGTAGTTAGAGCAAATACCTTTGTGGCTGAAGTCCTGGGTCTTGATCCTCGAGAAGTTGATGTTCCAGTCGTTGGGGGTCATGCTGGAATTACAATATTGCCTCTTTTGTCACAGGTTAAACCTCCCTGCACATTTACACCAGAAGAAACTGAATACCTCACCAACCGCATCCAAAATGGCGGGACTGAAGTTGTTGAGGCAAAAGCTGGAGCTGGGTCTGCAACTCTGTCAATGGCATTTGCTGCAGCTAAGTTTGCTGATGCGTGCCTTCGCGGATTAAGAGGCGATGCTGGTGTTATAGAATGCTCCTTTGTAGCATCTCAGCAGGTGACAGAGCTTCCTTTCTTTGCAACAAAAGTACGAATCGGCCGAACCGGAGTGGAAGAAATCTATCAACTGGGTCCATTGAATGAGTATGAAAGGAACGGGTTGGAAAAGGCCAAGAAGGAGTTAGCGGCAAGTATCCAAAAGGGGGTTTCTTTTATCAAGAAATAA 1074 46.55 METNVKATQRMAKLAAHLRPSNLQVEGTSGLEPVNCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADVSHMDTGAVVRGFLGQPQLESALTGMDLVVIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIASEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPREVDVPVVGGHAGITILPLLSQVKPPCTFTPEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAFAAAKFADACLRGLRGDAGVIECSFVASQQVTELPFFATKVRIGRTGVEEIYQLGPLNEYERNGLEKAKKELAASIQKGVSFIKK 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7932042 7935204 + Bda012305.1 Bda15g00476 22171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00476 357 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 2 357 - -
Bda15g00476 357 Gene3D - 190 357 IPR015955 GO:0003824|GO:0016616
Bda15g00476 357 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Bda15g00476 357 CDD MDH_glyoxysomal_mitochondrial 45 355 IPR010097 GO:0006099|GO:0030060
Bda15g00476 357 SUPERFAMILY LDH C-terminal domain-like 189 356 IPR015955 GO:0003824|GO:0016616
Bda15g00476 357 PIRSF Lac_mal_DH 44 355 IPR001557 GO:0016616|GO:0019752
Bda15g00476 357 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Bda15g00476 357 Gene3D - 37 189 - -
Bda15g00476 357 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Bda15g00476 357 PANTHER MALATE AND LACTATE DEHYDROGENASE 2 357 - -
Bda15g00476 357 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 46 356 IPR010097 GO:0006099|GO:0030060
Bda15g00476 357 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 354 IPR022383 GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00476 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - vvi:100232924 611.683
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00544 Bda-Chr6:7717519 Bda15g00476 Bda-Chr15:7932042 5.51E-135 dispersed
Bda10g00027 Bda-Chr10:505666 Bda15g00476 Bda-Chr15:7932042 0 dispersed
Bda13g00785 Bda-Chr13:9345781 Bda15g00476 Bda-Chr15:7932042 2.85E-18 dispersed
Bda15g00476 Bda-Chr15:7932042 Bda13g00062 Bda-Chr13:875389 4.31E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g823 . . . . . Bpe12g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1061 Cone10ag1076 . . . . . . Bda15g00476 . . . . Bma08g00024 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005288 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 39