Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00482 ATGAGTAGTAAAAAGAGGAGCTCCAACTCCGTGCAAGAGGTCGAGGGTCAACTGGATATACCCACTGCAGAAGACGTAGAGCAGAAGTCTTCCAAGAAGAAAATGAGAAGCGAAAAGGGGAAGAAAGCCGAAGTTGATGTGAATGCTAGTTCAATAAAACCTATGGAGAGAACAAAGAAAAGGAAAGCATTAGATAAAGAGCGACGGCATGCTTTTGTTGAGAATCAAAGTGCACAAAAAAAATCTGATGAGACTAAACCATTGATGGTGTCTCTGTCAAGTAATGGTCTCCCTGAGTTCCATATCAGCGTCTTCAAAGACTTGGCAGCAGCTGAAGTTTCTGTGAGAGAAGCTGCAGTAGAAACCTTGGTGATGGAGTTACAGGAAGTTCAAAGAGCCTATGATAAGTTAGAGAATAAGGATGTGGAGGGAGGTGGTTTGAAATTGGAAGCTGAAAAGGATGATGGGTTGGACAATTGTGCACCTTCTGTTAAATATGCTGTCCGTAGACTGGTTCGAGGTGTTTCTTCTTCTAGAGAGATTGACATTTTTTACAACGGATTTAAAGATATATTGGGCTGTGGTTATGTTCATTTGAGTTTTAAGAAATCACAGTACATGTACAGTGGTAGAGTAAGGATGCTGAGCGATGAACTCTTAATTTTTTCTCATCATCTTATAACATACTTGGCAATCAAGTTCTTTTTTTTTTGGCAGTGTGCAAGGCAGGGTTTTGCTCTAGGTTTAACAGTTTTGGTGGGTACAATCCCCAACATCAAGGTAGGCTCACTGATGAAACTCATTGCTGATTTGTTGGATGTTTCTTCATCAATGAAAGGCCAGGAAGTAAAGGACTGTCTCTTAGGTCGCTTGTTTGCATATGGTGCCCTTAGCCGCTCAGGAAGACTTACGCAGGAGTGTTACTCTAATAAAAACACTTCTTGCATTAAGGAGTTCACCACTATTCTCATATCCCTTGCAAGCAAAAAAAGATACTTACAAGAGCCAGCTGTCGCAATTATTCTAGATTTAATAGAAAAGTTGCCAATAGAAGCATCGCTGAATGATGTCCTTGAAGCTCCAGGAATTCAAGAATGGTTTGATGGGGCTATTGAAGTTGGCAATCCTGATGCCTTGCTTCTGGCTTTGAAATTGAGAGAGAGAATTTCTTTAGGCAATGCTTCATTCGCCAAGCTTTTGCCAAATCCTTATAGCACTGAAAAACTTTTTGCTGCTGAATGTCTTTCCTCTCTCTCCAATTGCTTCAAGGAGTCTACATTTTGTCAGCCTCGAATTCACAGTTTATGGTCAGTTCTTCTCAATATACTTTTACCTGACGTGGTTTTGCAATCTGAAGAATCATTGTCAGTTTCTTCTTTAAAGAAGCACAAAAAAAATCGCAAAAGTGGCTCTTCTGAAGAAGAAATTTCTAAGAATTTTCAGAATTTTTTGGAAGTTGTGATCGAAGGTTCTCTTCTCTCATCATCTCATGACCGTAAACATCTGGCCTTTGATGTTCTACTGACTCTCTTACCGAGACTTCCTGCATCTTTTATATCAATCATGCTTTCATATAAAGTTGTTCAGTGCATAGTGGATATACTTTCTACAAAGGATTCTTGGCTACATAAAGCTGTGCAATTTTTTATTAAAGAGCTATCAAATTGGGTAATGCACGATGATATGAGAAGAATTGCTGTCATTGTGGCTTTACAAAAGCACAGCTATGGAAAGTTTGATTGCATTACTAGGACAAAAACAGTTAAAATTTTGATGTCAGAATTCAAATCAGAATCTGGCTGTTTGCTTTTTATTCAGAACTTGGCAAACTTGTTTGTGGATGAAAGCCATACTTCTGAAGAGCCCTCTGACCAGAGTCAAACAACAGATGACAACTCTGAGGTTGGTTCAGTGGAGGAAAAGGATTCAGTTGGAACATTGGGTAACTCTGACTTTTTGAGAACATGGGTTGTAGAATCCCTCCCAAGCGTTTTGAAAAATTCTAGTTTGGAGGCTGATGCAAAGTTTCGGGTGCAAAAAGAAATTTTGAAATTTTTAGCGGTTCAGGGTCTCTTCACTGCTTCACTTGGCTCAGAAGTGACATCTTTTGAATTGCAGGAGAAATTTAGATGGCCAAAAGCAGCCACATCAAGTTCCCTTTCCATTATGTGCATTGAACAACTGCAGTTATTGCTGGCTAATGCTCAAAAGGCTGAAGGGTCTCGTGATTTGGCTAAGAGCTCCGAAACAAATGATCTCGGGGCTTATTGCATGAGGTTTCTTAGTACCATGCGCAACATTCCATCAGTTTCTCTCTTTAGACGTTTGAATGATGAAGATGAAAATTCGTTAAAAAAACTACAGGAGATGGAAACTGAACTTTGGAGGGAGGAAAAGAACTGTGGACTAAGTGCTGAGGCAGATAAATTGCATGCCCTGCGGTGCTTGCTTATTCAACTGTTTTTGCAAATACTCCTTCGGCCAGATGATTTTTCTGAAGCTGCATCTGAACTAATTATGTGTTGTAAGAAAGCATTCAGAGCCTCTGATCTTCTAGGCTCCACTGGGGAAGATGAACGGGAAGATGATGAAACACCTGAGTTAATGGATGTTCTTGTGGATACGTTGCTTTCATTGCTGCCACAGTCTTCAGCTCCCATGAGAACAGCAATTGAGCAGGTACGCATAAAGTGTAATTTAGGAATTCAAAATTTTCTTTATAACACTGTAAGTGAGAGTGAATATAATTTGTTACTGGAATATGTCAAGTCCCGGTTGTGTTTTCTTTCTTTTGCAATTTTTTGCTATATAGAAGAACAACTTTATTCCAGTTTAATTGATACCAAACTAAAGCAAATGGGTACGATGCTTGTTTTTAAGTACTTCTGTGAACAAATCACGGATGATGGTTTACTAAGAATGTTAAGAGTCATCAAGAAAAATTTGAAACCAGCTAGACATCAGAATGCAGAAAGTTCTGACAACGATGAGGAAGATGATGAAGATTTTCTGGATGTCGAAGAAGACGAAGAAATGGATGAAGCTGAGATTGGTGAAACAGGAGAGAGTGATGAGCAGACAGACGAATCGGAAGCTGTAGTTAGAGTTGATGAAGTGGACAACGAAGATTCTGACAATTCTGATAATTCTGGAGGAATGGATGATGATGCAATGTTTCGAATGGATACTTATCTTGCCCAAATTTTCAAAGAGCGAAAAAATCAGACTGGGAGTGAAAGTGCTCAATCTCAGCTCATGTTATTTAAGCTTCGTGTCCTCTCGCTGCTGGAAATCTACTTGCATAAAAATCCAGGTAACCCGCTGGTGCTATTGGTCTATTCAAACTTGGTTCGGGCATTCATAAGCTCACATTCTGCTGAAGGGAGTGAGCAGCTTGGACAACGACTATGGGGAATTCTGCAAAAGAAAGTCCTCAAAGCTAAAGATTATCCTCAGGGTGAAGCTGTTCAATTAGCTACACTTGAATCTTTACTGGAAAAGAGTCTCAAGCTAGCCTCGAAACCGTTCAGAAGAAAGAAATCTATTACAAACCCGTCCAAGAAACAGCAGTCGGCCTCCTGGAATCGACACAAGATGGTCATTTCCCTTGGTCAAAATTCAACATTTTGGATTCTGAAGATCGTTGATGCCAAAAATTTGTCCGAAACAGAGTTGCAGGGAGTATTTGACATCTTTGAAGGTGTATTTGTTGACTATTTCAACAGTAAAAAGTCTCAGATAAAATTTGAATTTCTCAAAGAAATCGTCAAACGAAGGCCATGGATAGGGCATCATCTGTTGGGGTTCCTTCTCGACAAATGTGGAATTGCAAACTCAGAATTCAGAAGGGTCGAGGCATTAGATTTGGTCATTGAGATATTGACATCACTCATTTCCTCGGATATCAGCTCAGACGATTCACAGAAGTCAGCGAAAGCCCATTTTCGGAGACTCAGGAAGTTGAAATCAGTGACACCAATGTCCTCCGAGATCATCAACTCAGACAGTTCACAGAACATGGTGAAAATGCATCTCAGTAAAATATGTGAGTTGATAAAGGAGTCACTGACAAACATGCCGGAAAAGCAGACGAGACGAGCCGGAGTGAGAAAGTTTTGCGTGTGGGTATTCAACATAGTGGCTTCTCTCAACTTAACCAAGCTATTTCTGGAGAGTCTGCCAGCGGAGGGCCATGCTGCTTGTGAAATGCAACTTGGGGAGCAGTTCATTAGTTTAAAGCAGGCAGATTAG 4251 40.18 MSSKKRSSNSVQEVEGQLDIPTAEDVEQKSSKKKMRSEKGKKAEVDVNASSIKPMERTKKRKALDKERRHAFVENQSAQKKSDETKPLMVSLSSNGLPEFHISVFKDLAAAEVSVREAAVETLVMELQEVQRAYDKLENKDVEGGGLKLEAEKDDGLDNCAPSVKYAVRRLVRGVSSSREIDIFYNGFKDILGCGYVHLSFKKSQYMYSGRVRMLSDELLIFSHHLITYLAIKFFFFWQCARQGFALGLTVLVGTIPNIKVGSLMKLIADLLDVSSSMKGQEVKDCLLGRLFAYGALSRSGRLTQECYSNKNTSCIKEFTTILISLASKKRYLQEPAVAIILDLIEKLPIEASLNDVLEAPGIQEWFDGAIEVGNPDALLLALKLRERISLGNASFAKLLPNPYSTEKLFAAECLSSLSNCFKESTFCQPRIHSLWSVLLNILLPDVVLQSEESLSVSSLKKHKKNRKSGSSEEEISKNFQNFLEVVIEGSLLSSSHDRKHLAFDVLLTLLPRLPASFISIMLSYKVVQCIVDILSTKDSWLHKAVQFFIKELSNWVMHDDMRRIAVIVALQKHSYGKFDCITRTKTVKILMSEFKSESGCLLFIQNLANLFVDESHTSEEPSDQSQTTDDNSEVGSVEEKDSVGTLGNSDFLRTWVVESLPSVLKNSSLEADAKFRVQKEILKFLAVQGLFTASLGSEVTSFELQEKFRWPKAATSSSLSIMCIEQLQLLLANAQKAEGSRDLAKSSETNDLGAYCMRFLSTMRNIPSVSLFRRLNDEDENSLKKLQEMETELWREEKNCGLSAEADKLHALRCLLIQLFLQILLRPDDFSEAASELIMCCKKAFRASDLLGSTGEDEREDDETPELMDVLVDTLLSLLPQSSAPMRTAIEQVRIKCNLGIQNFLYNTVSESEYNLLLEYVKSRLCFLSFAIFCYIEEQLYSSLIDTKLKQMGTMLVFKYFCEQITDDGLLRMLRVIKKNLKPARHQNAESSDNDEEDDEDFLDVEEDEEMDEAEIGETGESDEQTDESEAVVRVDEVDNEDSDNSDNSGGMDDDAMFRMDTYLAQIFKERKNQTGSESAQSQLMLFKLRVLSLLEIYLHKNPGNPLVLLVYSNLVRAFISSHSAEGSEQLGQRLWGILQKKVLKAKDYPQGEAVQLATLESLLEKSLKLASKPFRRKKSITNPSKKQQSASWNRHKMVISLGQNSTFWILKIVDAKNLSETELQGVFDIFEGVFVDYFNSKKSQIKFEFLKEIVKRRPWIGHHLLGFLLDKCGIANSEFRRVEALDLVIEILTSLISSDISSDDSQKSAKAHFRRLRKLKSVTPMSSEIINSDSSQNMVKMHLSKICELIKESLTNMPEKQTRRAGVRKFCVWVFNIVASLNLTKLFLESLPAEGHAACEMQLGEQFISLKQAD 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7993435 7999524 + Bda012311.1 Bda15g00482 22177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00482 1416 Coils Coil 773 793 - -
Bda15g00482 1416 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 239 894 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bda15g00482 1416 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 91 180 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bda15g00482 1416 PANTHER MYB-BINDING PROTEIN 1A FAMILY MEMBER 958 1414 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bda15g00482 1416 MobiDBLite consensus disorder prediction 1009 1056 - -
Bda15g00482 1416 Coils Coil 120 140 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 1 16 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 25 46 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 618 633 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 618 646 - -
Bda15g00482 1416 Pfam DNA polymerase phi 957 1100 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bda15g00482 1416 Pfam DNA polymerase phi 241 894 IPR007015 GO:0003677|GO:0005730|GO:0006355|GO:0008134
Bda15g00482 1416 MobiDBLite consensus disorder prediction 1009 1027 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 1 87 - -
Bda15g00482 1416 MobiDBLite consensus disorder prediction 53 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00482 K02331 POL5, MYBBP1A; DNA polymerase phi [EC:2.7.7.7] - cit:102615838 1400.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g866 . . . . . Bpe12g00719 . . Cmo19g00510 . . . . . . . Cpe15g00390 . . . . . . . . . . . . . . . . . . . Csa07g00644 . Cme01g00159 . Blo13g00201 Bda15g00482 . . . . Bma08g00031 . . . . . . Car19g00369 . . . . . . . . . Cla09g01618 Cam09g1534 Cec09g1780 Cco09g1863 . . Cre01g0781 . . Chy01g00167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007466 1 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00482 Bda_Chr15 FPKM 1.504692 1.474146 3.555338 3.615324 2.214947 2.520339 2.222838 4.07777 3.710673