Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00483 ATGACGTCCGCTGTGTTAGCCAACCAGAACGATCATAATTGGGCGCAGTCAAGGGCCGTTGGTGGCGAAGGCGGAGGACGAGGAGCATTCATGGCCAAAGGCCCTTACTCAAACCCTAACCCTAACCCTAAGTCCAACAAGAGGCAATTTCATGGTGAAATTAACGGCTTCCAGATGGAGGATTTCCCTGCCGCCACGCAATCGGCATCTGATGATGCTTCTTCGATCAGTCATCATCGCAGATCGTCAAACGGCACTGAGTTCAGTAATTACGTCAACTTCAATGTCAGTTCCTGCACCAGAGAGCAGCTGGTGGATCTCAAGATCCGACTTCAAGTTGAGCTTGAGCAGATTCGGAATTTGAAAAGCCGAATAGAGGCCAGCAAGCTACATCCCATTAACAATAACTCGAAGAAGTCTTCCAAGATATCAGGACACAAAAGACCAACACCGCCCAATTCCGGGAAAAATTTGAGTCGCTCGAATTCCGAAGCAGGGAGTCTGATGAAGGCGTGCTCCCAAATATTGACAAAGGTGATGAAACATAAGCACAGCTGGATTTTTAACAAGCCGGTAGATGTGGTCGGTATGGGTCTCCACGATTATCTTGATATAATTAAGCATCCGATGGATCTAGGATCCGTCAAATCGAAATTAGGCAAAAATGTTTATACTTCACCTGCAGATTTTGCTGCCGATGTGCGGCTGACTTTCAAAAATGCCATGGCATATAATCCACGTGGTCACGATGTGCACGCCATGGCAGAGCAGTTGTTGATTATATTTGAAGAATTATTTCAGCCTTTGAGGAAGATAGTGGAGGAAGAAAGGCAGTTAGATCCTGTTTACGATGAGGAGTTGCAAGCGAGTTCTTGGAATCACTTGGAAAGAGTGACAAAGAAGGATAATCCCAAGCATATCTCTAAGAAATTGGACTCTTCTAGGGCCCCGGTGCAGGCACCTGCCAGTTCGTCACACCTTCCATTGGCGCAGTCGCCAGTTAAAACCCCTTCTCCGGTGCGTGCTCCACCAGTGAAGCATTTGAAGCAACCAAAGCCGAAGGCTAAGGATCCTAACAAGCGAGACATGACTTTGGAGGAGAAGCACCGATTGGGACTTGGGTTGCAGAGTTTGCCCCAAGAGAAAATGGATCAGGTGGTGCAAATCATAAAGAAGAGAAATGGCCATCTGAAGCAGGATGGGGACGAGATCGAGTTGGACATTGAAGCTGTAGATACTGAGACCCTTTGGGAACTTGATCGGCTTGTTACGAATTGGAAGAAAATGGTGAGCAAGATTAAGCGTCAAGCACTCATGGGCAACATGAATACAACTTCAAATAAATCCAATGGGGATTTACCTCTGGAGAAACTAGAAGTTGGGACAGCTGCAAAAAAGCCGAGGAAAGGGGAGGCTGGTGAGGAAGATGTGGACATTGGAGATGATGAGATGCCAATGACTGGTTTCCCTCCTGTAGAAATTGAGAAAGATGCGGCCGGAGGACATGCCAGTAGTAGTTCTAGTGGCACCAGTGGCTCAAGTAGTGACGATTCTACTTCATCAAGTGGTATATAA 1575 46.92 MTSAVLANQNDHNWAQSRAVGGEGGGRGAFMAKGPYSNPNPNPKSNKRQFHGEINGFQMEDFPAATQSASDDASSISHHRRSSNGTEFSNYVNFNVSSCTREQLVDLKIRLQVELEQIRNLKSRIEASKLHPINNNSKKSSKISGHKRPTPPNSGKNLSRSNSEAGSLMKACSQILTKVMKHKHSWIFNKPVDVVGMGLHDYLDIIKHPMDLGSVKSKLGKNVYTSPADFAADVRLTFKNAMAYNPRGHDVHAMAEQLLIIFEELFQPLRKIVEEERQLDPVYDEELQASSWNHLERVTKKDNPKHISKKLDSSRAPVQAPASSSHLPLAQSPVKTPSPVRAPPVKHLKQPKPKAKDPNKRDMTLEEKHRLGLGLQSLPQEKMDQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMGNMNTTSNKSNGDLPLEKLEVGTAAKKPRKGEAGEEDVDIGDDEMPMTGFPPVEIEKDAAGGHASSSSSGTSGSSSDDSTSSSGI 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8000686 8002770 - Bda012312.1 Bda15g00483 22178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00483 524 MobiDBLite consensus disorder prediction 295 312 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 294 362 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 129 163 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 501 524 - -
Bda15g00483 524 PANTHER OSJNBA0053K19.4 PROTEIN 64 523 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 1 16 - -
Bda15g00483 524 SMART bromo_6 161 271 IPR001487 GO:0005515
Bda15g00483 524 MobiDBLite consensus disorder prediction 461 524 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 1 50 - -
Bda15g00483 524 MobiDBLite consensus disorder prediction 65 87 - -
Bda15g00483 524 CDD Bromo_plant1 168 264 IPR037377 -
Bda15g00483 524 Pfam Bromodomain extra-terminal - transcription regulation 363 424 IPR027353 -
Bda15g00483 524 MobiDBLite consensus disorder prediction 461 475 - -
Bda15g00483 524 ProSiteProfiles NET domain profile. 353 434 IPR027353 -
Bda15g00483 524 MobiDBLite consensus disorder prediction 317 332 - -
Bda15g00483 524 Gene3D - 125 282 IPR036427 GO:0005515
Bda15g00483 524 PANTHER TRANSCRIPTION FACTOR GTE2 64 523 - -
Bda15g00483 524 Coils Coil 101 124 - -
Bda15g00483 524 SUPERFAMILY Bromodomain 157 275 IPR036427 GO:0005515
Bda15g00483 524 Pfam Bromodomain 172 256 IPR001487 GO:0005515
Bda15g00483 524 Gene3D - 356 433 IPR038336 -
Bda15g00483 524 PRINTS Bromodomain signature 233 252 IPR001487 GO:0005515
Bda15g00483 524 PRINTS Bromodomain signature 183 196 IPR001487 GO:0005515
Bda15g00483 524 PRINTS Bromodomain signature 199 215 IPR001487 GO:0005515
Bda15g00483 524 PRINTS Bromodomain signature 215 233 IPR001487 GO:0005515
Bda15g00483 524 ProSiteProfiles Bromodomain profile. 180 252 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00483 - - - csv:101216341 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00286 Bda-Chr6:4850294 Bda15g00483 Bda-Chr15:8000686 1.64E-79 dispersed
Bda09g01103 Bda-Chr9:41544334 Bda15g00483 Bda-Chr15:8000686 0 dispersed
Bda13g00687 Bda-Chr13:7778135 Bda15g00483 Bda-Chr15:8000686 1.39E-78 dispersed
Bda15g00483 Bda-Chr15:8000686 Bda15g00665 Bda-Chr15:10133880 3.27E-41 dispersed
Bda15g00483 Bda-Chr15:8000686 Bda06g01139 Bda-Chr6:40344701 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00483 Bda_Chr15 FPKM 2.131274 3.205495 1.894655 2.897714 0.487244 0.104658 0.30714 0.0 0.057265