Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda15g00493 | ATGGTGTTTCAAATGAGAAAGCTGTTGTCTGATTCAGACGGATACTCTCCGGAGACCTGCTTAACCACGTTCTGCGACGATGGTAATAATTCAGGCTTCTGCCCAACTGCCTGTTTAGCGGCCTGCCCCAACGTCTGTCATTTTCCGATCTCATCCCCTCCCCCTTCAATCTTTGCTAAAACCCACAAGTTTTCCCTCCTCGTCATCTACCTCATTTCTATCCTCTCCTTCTGCTTCGTTCTGGTCCTCCTTTCCGCCTCCTACTGGAGATTCCGTTCCCGTCGCTTCGCTTCTACGGCAAGATCGTCGACACCGCCTCCGGAGAGCAACGACGAGTTTGTTGATGAAGAAGAGGGCCCGATCCTGGACCATCCGATCTGGTATATTCGCACCGTGGGCCTCCAGCCGTCGTTGATCAGCGCCATCACCATCTGCAAGTACAAGCGAGGTGACGGTCTGATCGAAGGCACCGACTGTTCTGTATGTTTGACTGAGTTTGAGGAAGACGAAGATCTGAGGCTGTTGCCCAAGTGTAACCATGCTTTTCACCTCCCGTGTATTGATACTTGGCTCCGATCGCACACCAATTGCCCACTGTGCCGAGCCCCAGTTGCTGCCATCGCTCTTCCGCCGGAACCAGCACCTGTAATTCCCGGTCAGGAAGAGGATGTTCAGCCGGAAAATTCGCAAAACATGGGCGATTCGAGTAACGAAGAAGATGATGACGAACTAGCAGTAGTCGAGGATGGAGTAAAGAGATTAGGTGATAATTCTAGCGCAGGGGAAGTAGGAATGCAACCAGTAAGAAGATCAGTTTCTCTTGATTCTCTGTCAGCTTTTCAGATCAGTTCTGCTCTTTCCCACGTTCTTGAAGCTCCAAAAACAGGATCTGATCGTCTTGAATTGGGCAAGACGAGTTCAAATCAAAAGGGGAAAACTAAAATCCTTCTGAGCTTAGTGTCTGCTTCTTCGTCTGGAAAATCTGTAAGCAAAGAGTCTATGAAGAGATCACTTTCCTGTACCAGCAAGTTCTTCCAAAGAACCTCGTCAACCCAGAGGAAAAATGGAGTGATTCCCAGATGA | 1083 | 49.31 | MVFQMRKLLSDSDGYSPETCLTTFCDDGNNSGFCPTACLAACPNVCHFPISSPPPSIFAKTHKFSLLVIYLISILSFCFVLVLLSASYWRFRSRRFASTARSSTPPPESNDEFVDEEEGPILDHPIWYIRTVGLQPSLISAITICKYKRGDGLIEGTDCSVCLTEFEEDEDLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPVAAIALPPEPAPVIPGQEEDVQPENSQNMGDSSNEEDDDELAVVEDGVKRLGDNSSAGEVGMQPVRRSVSLDSLSAFQISSALSHVLEAPKTGSDRLELGKTSSNQKGKTKILLSLVSASSSGKSVSKESMKRSLSCTSKFFQRTSSTQRKNGVIPR | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8059195 | 8060277 | - | Bda012321.1 | Bda15g00493 | 22188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda15g00493 | 360 | PANTHER | RING-H2 FINGER PROTEIN ATL54 | 20 | 348 | - | - | |
Bda15g00493 | 360 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 20 | 348 | IPR044675 | - | |
Bda15g00493 | 360 | SMART | ring_2 | 159 | 200 | IPR001841 | - | |
Bda15g00493 | 360 | CDD | RING-H2_PA-TM-RING | 158 | 201 | - | - | |
Bda15g00493 | 360 | SUPERFAMILY | RING/U-box | 153 | 207 | - | - | |
Bda15g00493 | 360 | Pfam | Ring finger domain | 158 | 201 | IPR001841 | - | |
Bda15g00493 | 360 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 207 | IPR013083 | - | |
Bda15g00493 | 360 | MobiDBLite | consensus disorder prediction | 212 | 243 | - | - | |
Bda15g00493 | 360 | ProSiteProfiles | Zinc finger RING-type profile. | 159 | 201 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda11g00783 | Bda-Chr11:7810461 | Bda15g00493 | Bda-Chr15:8059195 | 1.27E-52 | dispersed | |
Bda12g00723 | Bda-Chr12:34514547 | Bda15g00493 | Bda-Chr15:8059195 | 3.41E-23 | dispersed | |
Bda13g00470 | Bda-Chr13:5648394 | Bda15g00493 | Bda-Chr15:8059195 | 2.69E-34 | dispersed | |
Bda14g01149 | Bda-Chr14:10673115 | Bda15g00493 | Bda-Chr15:8059195 | 2.05E-24 | dispersed | |
Bda15g00493 | Bda-Chr15:8059195 | Bda05g00372 | Bda-Chr5:48279577 | 2.48E-21 | dispersed | |
Bda15g00493 | Bda-Chr15:8059195 | Bda12g00528 | Bda-Chr12:8224127 | 2.37E-21 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda15g00493 | - | - | cmo:103495376 | 277.33 |