Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00493 ATGGTGTTTCAAATGAGAAAGCTGTTGTCTGATTCAGACGGATACTCTCCGGAGACCTGCTTAACCACGTTCTGCGACGATGGTAATAATTCAGGCTTCTGCCCAACTGCCTGTTTAGCGGCCTGCCCCAACGTCTGTCATTTTCCGATCTCATCCCCTCCCCCTTCAATCTTTGCTAAAACCCACAAGTTTTCCCTCCTCGTCATCTACCTCATTTCTATCCTCTCCTTCTGCTTCGTTCTGGTCCTCCTTTCCGCCTCCTACTGGAGATTCCGTTCCCGTCGCTTCGCTTCTACGGCAAGATCGTCGACACCGCCTCCGGAGAGCAACGACGAGTTTGTTGATGAAGAAGAGGGCCCGATCCTGGACCATCCGATCTGGTATATTCGCACCGTGGGCCTCCAGCCGTCGTTGATCAGCGCCATCACCATCTGCAAGTACAAGCGAGGTGACGGTCTGATCGAAGGCACCGACTGTTCTGTATGTTTGACTGAGTTTGAGGAAGACGAAGATCTGAGGCTGTTGCCCAAGTGTAACCATGCTTTTCACCTCCCGTGTATTGATACTTGGCTCCGATCGCACACCAATTGCCCACTGTGCCGAGCCCCAGTTGCTGCCATCGCTCTTCCGCCGGAACCAGCACCTGTAATTCCCGGTCAGGAAGAGGATGTTCAGCCGGAAAATTCGCAAAACATGGGCGATTCGAGTAACGAAGAAGATGATGACGAACTAGCAGTAGTCGAGGATGGAGTAAAGAGATTAGGTGATAATTCTAGCGCAGGGGAAGTAGGAATGCAACCAGTAAGAAGATCAGTTTCTCTTGATTCTCTGTCAGCTTTTCAGATCAGTTCTGCTCTTTCCCACGTTCTTGAAGCTCCAAAAACAGGATCTGATCGTCTTGAATTGGGCAAGACGAGTTCAAATCAAAAGGGGAAAACTAAAATCCTTCTGAGCTTAGTGTCTGCTTCTTCGTCTGGAAAATCTGTAAGCAAAGAGTCTATGAAGAGATCACTTTCCTGTACCAGCAAGTTCTTCCAAAGAACCTCGTCAACCCAGAGGAAAAATGGAGTGATTCCCAGATGA 1083 49.31 MVFQMRKLLSDSDGYSPETCLTTFCDDGNNSGFCPTACLAACPNVCHFPISSPPPSIFAKTHKFSLLVIYLISILSFCFVLVLLSASYWRFRSRRFASTARSSTPPPESNDEFVDEEEGPILDHPIWYIRTVGLQPSLISAITICKYKRGDGLIEGTDCSVCLTEFEEDEDLRLLPKCNHAFHLPCIDTWLRSHTNCPLCRAPVAAIALPPEPAPVIPGQEEDVQPENSQNMGDSSNEEDDDELAVVEDGVKRLGDNSSAGEVGMQPVRRSVSLDSLSAFQISSALSHVLEAPKTGSDRLELGKTSSNQKGKTKILLSLVSASSSGKSVSKESMKRSLSCTSKFFQRTSSTQRKNGVIPR 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8059195 8060277 - Bda012321.1 Bda15g00493 22188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00493 360 PANTHER RING-H2 FINGER PROTEIN ATL54 20 348 - -
Bda15g00493 360 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 348 IPR044675 -
Bda15g00493 360 SMART ring_2 159 200 IPR001841 -
Bda15g00493 360 CDD RING-H2_PA-TM-RING 158 201 - -
Bda15g00493 360 SUPERFAMILY RING/U-box 153 207 - -
Bda15g00493 360 Pfam Ring finger domain 158 201 IPR001841 -
Bda15g00493 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
Bda15g00493 360 MobiDBLite consensus disorder prediction 212 243 - -
Bda15g00493 360 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g00783 Bda-Chr11:7810461 Bda15g00493 Bda-Chr15:8059195 1.27E-52 dispersed
Bda12g00723 Bda-Chr12:34514547 Bda15g00493 Bda-Chr15:8059195 3.41E-23 dispersed
Bda13g00470 Bda-Chr13:5648394 Bda15g00493 Bda-Chr15:8059195 2.69E-34 dispersed
Bda14g01149 Bda-Chr14:10673115 Bda15g00493 Bda-Chr15:8059195 2.05E-24 dispersed
Bda15g00493 Bda-Chr15:8059195 Bda05g00372 Bda-Chr5:48279577 2.48E-21 dispersed
Bda15g00493 Bda-Chr15:8059195 Bda12g00528 Bda-Chr12:8224127 2.37E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00493 - - cmo:103495376 277.33