Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00503 ACCACCCGCATGGCTTACGGGTCTATTTTGCAGGGCTGTTTCAGTTCCACCATGTCCATGTCTCTTAGACCCACTTCGCCCTTTCCTTTCCGCAGACCGCCTAAAGGTTTAGAACCTTTATTTCGCTACCTTACCCTGAAGAACAGCCAACCACTAGGGTTAAGGAACTTCCATGCTCGCTCGCGTTTGACGCCGGGGGTATGGTGTTTGAGTTCTTCTAGAGAAATGGTAGAGTGGAAGGAAAAACAGCTGAATTTGGTTCGTTTGAGGCATAGAAGTGTTGCGTTTCCATTTTCCCAGTACCTTCTAAGCTCTAATTATGGGCGGTTTGCTTATCAAGATGCGTCCAGTGATGAATCGGATTACGAAATGGGGTCTCCTCAGCAACAAATGGGTGGATCAACCGTTGATAATATTGATGAATGGAGGTGGAAGTTAACTATGCTTCTTCGCAACAATGAGGAAAAAGAGATTGTTTCAAGGGAGAAGAAAGATAGACGTGATTTTGAGCATCTTTCAGCAATAGCAACAAGAATGGGTTTGCATAGTCGACAATATTCTAAAGTAGTAGCCTTTAGTAAAGATCCTCTTCCGAATTACCGGCCAGATTTGGATGATAAGCGGCCACAAAGAGAGGTGGTATTACCTTTTGGGCTTCAAAAAGATGTCGATGCCCATCTCAATTTATACCTTTCTAAAAAATCTATGTCTGAGAGTAGAGGAAGTTTTTCTGACGATCCTTGGTCCATTCACGGCATTGGTGGAAATACTGCTTCTAATAATGTGCAGCAGGAGCCATCAACTACAAATAATATATTCAGGGAGAAGTTTCTTCAACGCATAAGTTTGCAAATGCGAAATCAGCAACAGAACTGGCAGGATTCTCCCGAAGGTCAAAAGATGGATGAATTTCGTAGAAGTCTCCCTGCATTCAAGGAGAAGGATATGCTGTTGAAAGCCGTTGCAGAAAACCAGGTTGTTGTTGTCTCTGGTGAAACTGGATGTGGCAAAACAACTCAACTTCCCCAATATATTCTAGAATCGGAAATTAATGCTGCCCGTGGAGCTTTGTGTAGCATAATTTGTACCCAGCCAAGGCGAATATCAGTGATGGCTGTATCTGAAAGAGTTGCTGCAGAGCGCGGAGAAAAACTGGGAGAATCTGTTGGTTACAAAGTTCGATTGGAAGGAATTAAAGGGAAGGACACCCGTCTTCTGTTTTGCACCACCGGTGTATTATTGAGGAGATTACTCGTTGACAGAAATTTAAAAGGTGTTACTCATGTTATTGTTGATGAGATTCATGAGCGTGGAATGAATGAAGATTTTCTTCTGATTGTACTGAAGGATCTTCTACCTCGTCGACCCGAGTTGAGGTTGATTTTGATGAGTGCTACCTTAAATGCAGAGCTTTTCTCTTCTTATTTTGGTGGTGCTCCTAAAATCCATATTCCTGGTTTTACACATCCTGTGCGAGCCCACTTTTTGGAGAATATCCTGGAAAGGACGGGCTATCGGTTGACACCTTATAATCAAATTGACGACTATGGTCAAGAAAAGGTTTGGAAAATGCAGAAACAAACTCAATCTCTTAAAAGAAGGAAGAGCGTGATAGCTTCTTCCATTGAGGATGCGCTAGAGACTGCTGATTTTAATGGATATAGCCCTCGTACTCGCGAGTCTCTATCTTGCTGGAATCCTGATTCCATTGGTTTTAACTTGATTGAGCATGTTCTTTGTTACATAGTTGAGAAAGAAAGGCCTGGTGCAATTTTGGTATTTATGACTGGTTGGGACGACATAAACTGTTTAAAGGATCAGCTCCAATCTCACCTCTTGTTGGGAGATCCTAGCAGAGTTTTGCTGCTTGCATGCCATGGTTCTATGGCCAGCTCTGAGCAGAGGTTAATATTTGATAAACCTGAAGATGGAATACGGAAAATAGTCCTAGCGACCAACATGGCTGAGACTAGTATCACCATCAATGATGTGGTTTTTGTAGTTGATTGTGGAAAAGCAAAGGAAACATCATATGATGCACTGAATAACACTCCTTGTTTGCTTCCATCTTGGATATCAAAGGCTGCAGCACGACAAAGAAAAGGAAGAGCTGGACGGGTTCAACCTGGCGAGGCTTTTCATCTGTACCCAAGATGTGTATATGATGCTTTTGCTGATTATCAATTACCAGAACTTTTGAGAACGCCATTACAGTCTTTGTGTTTGCAAATCAAAAGTCTGCAACTAGGAAGTATTTCAGAGTTTCTAGCAAAGGCATTGCAGTCACCTGAACCTTTATCGGTTCAAAATGCTGTTGAGTATTTGAAAACTATTGGAGCATTGGACGAGAAAGAGAATCTGACAGTGCTAGGTCGCCACTTATCAATGCTTCCAGTGGAACCTAAGCTTGGAAAAATGCTCGTGTATGGAGCTATTTTCAACTGTCTAGATCCAATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCTTTCCTAATGCCATTCGATAAGAAAGAGCTTGCAGAATCGGCAAAATCTCAATTTGCAGGTCGCGATTGTAGTGACCATATTGCGCTTGTGAGAGCTTATGAGGGTTGGAAAGATGCTGAAATGCGGCAATCTGGTTTTGAGTATTGTTGGAGAAATTTCCTTTCGGCTCAAACTCTAAAAGCCATAGATTCTTTGAGAAAACAGTTCTTTTTTTTGCTTAAGGATGCCGGTTTGATTGATAACACTTCTCAACACTACAACATGTGGGGCCATGATGAACATCTAATCCGTGCAGTTGTCTGTGCGGGGCTTTTCCCAGGAATATGCTCCGTTGTGAACAAAGAGAAGTCAATAGCATTGAAAACGATGGAGGATGGTCAAGTTCTTCTATATTCTAGTTCTGTGAATTCATCGATACCCAAAATTCCATACCCGTGGCTCGTGTTTAACGATAAAGTGAAAGTGAATTCGGTTTTTCTTCGGGACTCTACTGGCGTGTCGGATTCTGTTCTACTTTTGTTTGGGGGCAACATTTCCAGTGGCGGACTAGATGGGCACCTTAAAATGCTGGAAGGATACTTGGAGTTTTTTATGAAACCTGATTTGGCTGAAACTTATTTGAGATTAAAAAGAGAGCTGGAGGAATTTATTCACAAAATGCTTCTGAATCCGAAGTTAGATTTACAGTCGCATGTTGAGCTTCTGTCTGCAGTGAGGTTGCTAGTCTCAGAGGATCAATGTGAAGGTAGATTTGTTTTTGGTCGAAAGGCGTCGTTGCCATCAGCAAAGGCTTCGAAGGAGAGACAATCTGGGGGCGGTGGAGATAACTATAAAAATGAGCTTCAGACAGTTCTTGCAAGAGCAGGACATGAAATTCCCACTTATAAGACAAGACAACTAAAAAACAACCAGTTTCGATCTACAGTTATCTTCAATGGCTTAAATTTTGTTGGCCAGCCCTGTAGTAACAAGAAACTTGCAGAAAAAGAGGCAGCAGGTGAGGCGTTGCTATGGCTGAAGGGCGAGACTCATTCATCTTCGCAGGATATTGACCACGTCTCTCTAATTTTAAAGCCGAGCAAAAATAAACAGAAGACGGCTTCTACTCGTAGTGCCAAATGGAGTTAA 3621 42.14 TTRMAYGSILQGCFSSTMSMSLRPTSPFPFRRPPKGLEPLFRYLTLKNSQPLGLRNFHARSRLTPGVWCLSSSREMVEWKEKQLNLVRLRHRSVAFPFSQYLLSSNYGRFAYQDASSDESDYEMGSPQQQMGGSTVDNIDEWRWKLTMLLRNNEEKEIVSREKKDRRDFEHLSAIATRMGLHSRQYSKVVAFSKDPLPNYRPDLDDKRPQREVVLPFGLQKDVDAHLNLYLSKKSMSESRGSFSDDPWSIHGIGGNTASNNVQQEPSTTNNIFREKFLQRISLQMRNQQQNWQDSPEGQKMDEFRRSLPAFKEKDMLLKAVAENQVVVVSGETGCGKTTQLPQYILESEINAARGALCSIICTQPRRISVMAVSERVAAERGEKLGESVGYKVRLEGIKGKDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELFSSYFGGAPKIHIPGFTHPVRAHFLENILERTGYRLTPYNQIDDYGQEKVWKMQKQTQSLKRRKSVIASSIEDALETADFNGYSPRTRESLSCWNPDSIGFNLIEHVLCYIVEKERPGAILVFMTGWDDINCLKDQLQSHLLLGDPSRVLLLACHGSMASSEQRLIFDKPEDGIRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQPGEAFHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLAKALQSPEPLSVQNAVEYLKTIGALDEKENLTVLGRHLSMLPVEPKLGKMLVYGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKELAESAKSQFAGRDCSDHIALVRAYEGWKDAEMRQSGFEYCWRNFLSAQTLKAIDSLRKQFFFLLKDAGLIDNTSQHYNMWGHDEHLIRAVVCAGLFPGICSVVNKEKSIALKTMEDGQVLLYSSSVNSSIPKIPYPWLVFNDKVKVNSVFLRDSTGVSDSVLLLFGGNISSGGLDGHLKMLEGYLEFFMKPDLAETYLRLKRELEEFIHKMLLNPKLDLQSHVELLSAVRLLVSEDQCEGRFVFGRKASLPSAKASKERQSGGGGDNYKNELQTVLARAGHEIPTYKTRQLKNNQFRSTVIFNGLNFVGQPCSNKKLAEKEAAGEALLWLKGETHSSSQDIDHVSLILKPSKNKQKTASTRSAKWS 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8119905 8132325 + Bda012333.1 Bda15g00503 22198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00503 1206 Gene3D - 257 486 IPR027417 -
Bda15g00503 1206 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 110 1111 - -
Bda15g00503 1206 PANTHER ATP-DEPENDENT RNA HELICASE 110 1111 - -
Bda15g00503 1206 SUPERFAMILY dsRNA-binding domain-like 1105 1184 - -
Bda15g00503 1206 SMART helicmild6 602 708 IPR001650 -
Bda15g00503 1206 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 927 1009 IPR011709 -
Bda15g00503 1206 Gene3D - 568 726 IPR027417 -
Bda15g00503 1206 SMART ha2_5 770 861 IPR007502 GO:0004386
Bda15g00503 1206 Pfam Helicase associated domain (HA2) 771 844 IPR007502 GO:0004386
Bda15g00503 1206 SMART DRBM_3 1108 1171 IPR014720 -
Bda15g00503 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 748 IPR001650 -
Bda15g00503 1206 Pfam DEAD/DEAH box helicase 319 469 IPR011545 GO:0003676|GO:0005524
Bda15g00503 1206 Gene3D - 750 852 - -
Bda15g00503 1206 Gene3D - 1088 1175 - -
Bda15g00503 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 485 IPR014001 -
Bda15g00503 1206 SMART ultradead3 306 494 IPR014001 -
Bda15g00503 1206 CDD SF2_C_RHA 554 716 - -
Bda15g00503 1206 Pfam Helicase conserved C-terminal domain 576 707 IPR001650 -
Bda15g00503 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 306 905 IPR027417 -
Bda15g00503 1206 CDD DEXHc_RHA-like 324 484 - -
Bda15g00503 1206 Pfam Double-stranded RNA binding motif 1108 1170 IPR014720 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00503 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 1797.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01838 Bda-Chr1:54489655 Bda15g00503 Bda-Chr15:8119905 1.21E-29 dispersed
Bda05g01128 Bda-Chr5:59496151 Bda15g00503 Bda-Chr15:8119905 0 dispersed
Bda06g00200 Bda-Chr6:2628129 Bda15g00503 Bda-Chr15:8119905 8.63E-143 dispersed
Bda12g00063 Bda-Chr12:504313 Bda15g00503 Bda-Chr15:8119905 9.20E-53 dispersed
Bda15g00121 Bda-Chr15:3621492 Bda15g00503 Bda-Chr15:8119905 0 dispersed
Bda15g00503 Bda-Chr15:8119905 Bda01g02183 Bda-Chr1:57807733 1.10E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00503 Bda_Chr15 FPKM 6.41282 7.604251 6.289425 8.515937 8.163554 8.99888 6.960592 12.162178 14.190878