Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00506 ATGTCTTCCATTTCCAGCGACGACGAAGATGAGAACTTGTCAGGTGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCCCTAAGGCGAGCATGCTTGCTCACCGGGGCGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGCAACGCTTGCTCCGGCGGACTTGTTCCTGTTTGTGAAAGTGATGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGAACGGTTCTCGATGTCTAACGAGGAGGATCAACATCTGTCTGTGAAACCTATAAATACTATTCCTCCTGTGACGTCCGACGACGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAGCGACGCTTTGCGGCCTATGATAAAGGTAGGCTTTTGAAGGAATGTTACAATAAATTATCTAGCATTTCCGGGATAGAGTGCCCAAACTCAGAAGAACTTTGTAATACTTCCCATAACCCAAGTAATGTGGATCAGAATTCTTCCTCCGCAATATGGAAACTACCTAATGCTTACCAGTCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCACTAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGCTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCATTGTCCCAGAAGAAAGATCCACGTCTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCCACCATGCTTTATGGTCCCGCGGAGAATTCTCATGTTGCAAAGTATAGAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAGCTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCAGTGGCTCAATTCAGGTATTATGGTACTGTGGAATCGTCTGGAGATTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTTAATTGGGAAAGATTGGCTTCCATGTACGTTGCGGGTCGGTCTGGTGCAGAATGTCAAGCAAGGTGGTTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACGGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCACTGGGGACTAATAGGACTCCTTGTCAGTGCCTATCACGCTATCAGAGAAGTTTAAATGCTTCGGTACTCAAAAGAGAGTGGACCAAGGAGGATGACGATAAACTTTGTTCTGCTGTAGAAACAATTGGTGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGACAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCCGCAAGAACTAGAAGAGGGTCATTCACACCTGTTGAAGACAAACGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATCCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTGAAAAGAGGCAACTGGACTGACGAAGAGGATCGGATGCTTTCAGCAGCGATTAGAGAACATGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACAAAATTATTTCCAAATGAAGTTCCATTGCTCCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCAGAAAGATCTACCCTTCTCCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGACGATCCTTCTCAGAAAAGGAAGAGAAAGCGGAGGTCTGATTCATAG 2040 42.75 MSSISSDDEDENLSGEEAEGGFDEDIEALRRACLLTGADPDDCSYQSLSVGVGNACSGGLVPVCESDGDDDLELVRSIRERFSMSNEEDQHLSVKPINTIPPVTSDDEEDDFETLRAIQRRFAAYDKGRLLKECYNKLSSISGIECPNSEELCNTSHNPSNVDQNSSSAIWKLPNAYQSLTSPLQGSGLPKSALAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRLQLISVEKLCTSKDLSKVKDKKVSTMLYGPAENSHVAKYRMALTMFPLSLERKKWSKAEKENLGKGIKQQFQEMALQISVAQFRYYGTVESSGDSNDIDNILESIKDFDFTPEKIREFLPKVNWERLASMYVAGRSGAECQARWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASVLKREWTKEDDDKLCSAVETIGVGDWQAVASALEGRTGTQCSNRWKKSLDPARTRRGSFTPVEDKRLKIAVMLFGPKNWNKKAQSLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDRMLSAAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENDDPSQKRKRKRRSDS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8145613 8155742 - Bda012335.2 Bda15g00506 22201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00506 679 Gene3D - 514 566 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 515 562 IPR017930 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 386 454 IPR009057 -
Bda15g00506 679 CDD SANT 518 560 IPR001005 -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 563 613 IPR001005 -
Bda15g00506 679 MobiDBLite consensus disorder prediction 665 679 - -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 405 457 IPR001005 -
Bda15g00506 679 Gene3D - 304 409 - -
Bda15g00506 679 MobiDBLite consensus disorder prediction 1 23 - -
Bda15g00506 679 CDD SANT 412 457 IPR001005 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 513 609 IPR009057 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 442 512 IPR009057 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 463 507 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 568 612 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 516 562 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 411 455 IPR001005 -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 458 509 IPR001005 -
Bda15g00506 679 SMART sant 462 511 IPR001005 -
Bda15g00506 679 SMART sant 515 564 IPR001005 -
Bda15g00506 679 SMART sant 307 406 IPR001005 -
Bda15g00506 679 SMART sant 409 459 IPR001005 -
Bda15g00506 679 SMART sant 567 615 IPR001005 -
Bda15g00506 679 MobiDBLite consensus disorder prediction 9 23 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 513 IPR017930 -
Bda15g00506 679 Gene3D - 410 457 - -
Bda15g00506 679 MobiDBLite consensus disorder prediction 656 679 - -
Bda15g00506 679 CDD SANT 570 613 IPR001005 -
Bda15g00506 679 Gene3D - 567 616 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 563 617 IPR017930 -
Bda15g00506 679 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 676 - -
Bda15g00506 679 CDD SANT 465 509 IPR001005 -
Bda15g00506 679 Gene3D - 462 512 - -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 511 562 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00506 Bda-Chr15:8145613 Bda03g01467 Bda-Chr3:52603883 3.40E-13 dispersed
Bda15g00506 Bda-Chr15:8145613 Bda05g00965 Bda-Chr5:58137792 1.57E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17172 PF00249 Myb_DNA-binding 2.70E-10 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00506 K09422 - qsu:112030773 789.26