Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00506 ATGTCTTCCATTTCCAGCGACGACGAAGATGAGAACTTGTCAGGTGAAGAAGCCGAAGGCGGTTTTGATGAGGACATTGAAGCCCTAAGGCGAGCATGCTTGCTCACCGGGGCGGATCCTGATGATTGTAGTTATCAGTCTTTGTCTGTCGGCGTCGGCAACGCTTGCTCCGGCGGACTTGTTCCTGTTTGTGAAAGTGATGGCGATGATGATCTCGAACTTGTGCGTAGCATTCGGGAACGGTTCTCGATGTCTAACGAGGAGGATCAACATCTGTCTGTGAAACCTATAAATACTATTCCTCCTGTGACGTCCGACGACGAGGAGGACGATTTTGAAACGCTCCGGGCCATTCAGCGACGCTTTGCGGCCTATGATAAAGGTAGGCTTTTGAAGGAATGTTACAATAAATTATCTAGCATTTCCGGGATAGAGTGCCCAAACTCAGAAGAACTTTGTAATACTTCCCATAACCCAAGTAATGTGGATCAGAATTCTTCCTCCGCAATATGGAAACTACCTAATGCTTACCAGTCATTGACATCACCACTGCAAGGTTCTGGGTTACCAAAGTCTGCACTAGCATTTATTGATGCCATTAAAAAAAATAGATCTTGTCAGAAGCTCCTTCGAAGTAAGTTGATTCACATTGAGGCAAAACTTGAGGAGAACAAAGGGCTGAAAGACCGGTTCAAAATCTTGAAAGACTTTCAGGTTTCATGTAAAAGAAGAATAGGGCGTGCATTGTCCCAGAAGAAAGATCCACGTCTTCAGCTAATATCCGTGGAGAAACTGTGCACTTCAAAGGATTTGTCGAAGGTTAAGGACAAAAAGGTATCCACCATGCTTTATGGTCCCGCGGAGAATTCTCATGTTGCAAAGTATAGAATGGCTTTAACCATGTTTCCACTTTCACTTGAACGGAAAAAATGGTCAAAAGCTGAAAAAGAAAATCTTGGGAAGGGAATAAAACAACAATTTCAAGAAATGGCGCTTCAAATTTCAGTGGCTCAATTCAGGTATTATGGTACTGTGGAATCGTCTGGAGATTCAAATGATATTGATAATATTCTTGAGTCAATTAAAGATTTTGATTTCACTCCTGAAAAGATTAGGGAGTTTCTGCCAAAGGTTAATTGGGAAAGATTGGCTTCCATGTACGTTGCGGGTCGGTCTGGTGCAGAATGTCAAGCAAGGTGGTTGAATTATGAAGATCCATTGATCAATCATAACCCATGGACGGCAATAGAGGATAAGAATCTCTTGTTCATCATCCAAGAAAAAGGGATAAATAACTGGTTTGATATAGCAGTGTCACTGGGGACTAATAGGACTCCTTGTCAGTGCCTATCACGCTATCAGAGAAGTTTAAATGCTTCGGTACTCAAAAGAGAGTGGACCAAGGAGGATGACGATAAACTTTGTTCTGCTGTAGAAACAATTGGTGTGGGAGATTGGCAAGCTGTAGCTTCTGCCTTAGAAGGACGGACAGGTACCCAATGCTCAAATAGATGGAAAAAATCACTTGATCCCGCAAGAACTAGAAGAGGGTCATTCACACCTGTTGAAGACAAACGCCTGAAGATTGCAGTAATGCTTTTTGGGCCAAAAAATTGGAATAAGAAAGCTCAATCCTTGCCAGGTCGAAACCAAGTTCAATGTAGAGAAAGATGGTACAATTGTTTAGATCCTTCTCTGAAAAGAGGCAACTGGACTGACGAAGAGGATCGGATGCTTTCAGCAGCGATTAGAGAACATGGCTATAGTTGGGCCAAGGTGGCGACATGTGTGCCTTCACGTACTGATAATGAGTGTCGGAGGAGGTGGACAAAATTATTTCCAAATGAAGTTCCATTGCTCCAAGAAGCAAGAAGAATTCAAAAGGCCGCTTTTATTGGTAACTTTGTTGATCGAGAGTCAGAAAGATCTACCCTTCTCCTTATTGACTTTCAACCAACACCCATTACAAATCCAATCATTGCACCAGAGAATGACGATCCTTCTCAGAAAAGGAAGAGAAAGCGGAGGTCTGATTCATAG 2040 42.75 MSSISSDDEDENLSGEEAEGGFDEDIEALRRACLLTGADPDDCSYQSLSVGVGNACSGGLVPVCESDGDDDLELVRSIRERFSMSNEEDQHLSVKPINTIPPVTSDDEEDDFETLRAIQRRFAAYDKGRLLKECYNKLSSISGIECPNSEELCNTSHNPSNVDQNSSSAIWKLPNAYQSLTSPLQGSGLPKSALAFIDAIKKNRSCQKLLRSKLIHIEAKLEENKGLKDRFKILKDFQVSCKRRIGRALSQKKDPRLQLISVEKLCTSKDLSKVKDKKVSTMLYGPAENSHVAKYRMALTMFPLSLERKKWSKAEKENLGKGIKQQFQEMALQISVAQFRYYGTVESSGDSNDIDNILESIKDFDFTPEKIREFLPKVNWERLASMYVAGRSGAECQARWLNYEDPLINHNPWTAIEDKNLLFIIQEKGINNWFDIAVSLGTNRTPCQCLSRYQRSLNASVLKREWTKEDDDKLCSAVETIGVGDWQAVASALEGRTGTQCSNRWKKSLDPARTRRGSFTPVEDKRLKIAVMLFGPKNWNKKAQSLPGRNQVQCRERWYNCLDPSLKRGNWTDEEDRMLSAAIREHGYSWAKVATCVPSRTDNECRRRWTKLFPNEVPLLQEARRIQKAAFIGNFVDRESERSTLLLIDFQPTPITNPIIAPENDDPSQKRKRKRRSDS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8145613 8155742 - Bda012335.2 Bda15g00506 22201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00506 679 Gene3D - 514 566 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 515 562 IPR017930 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 386 454 IPR009057 -
Bda15g00506 679 CDD SANT 518 560 IPR001005 -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 563 613 IPR001005 -
Bda15g00506 679 MobiDBLite consensus disorder prediction 665 679 - -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 405 457 IPR001005 -
Bda15g00506 679 Gene3D - 304 409 - -
Bda15g00506 679 MobiDBLite consensus disorder prediction 1 23 - -
Bda15g00506 679 CDD SANT 412 457 IPR001005 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 513 609 IPR009057 -
Bda15g00506 679 SUPERFAMILY Homeodomain-like 442 512 IPR009057 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 463 507 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 568 612 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 516 562 IPR001005 -
Bda15g00506 679 Pfam Myb-like DNA-binding domain 411 455 IPR001005 -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 458 509 IPR001005 -
Bda15g00506 679 SMART sant 462 511 IPR001005 -
Bda15g00506 679 SMART sant 515 564 IPR001005 -
Bda15g00506 679 SMART sant 307 406 IPR001005 -
Bda15g00506 679 SMART sant 409 459 IPR001005 -
Bda15g00506 679 SMART sant 567 615 IPR001005 -
Bda15g00506 679 MobiDBLite consensus disorder prediction 9 23 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 458 513 IPR017930 -
Bda15g00506 679 Gene3D - 410 457 - -
Bda15g00506 679 MobiDBLite consensus disorder prediction 656 679 - -
Bda15g00506 679 CDD SANT 570 613 IPR001005 -
Bda15g00506 679 Gene3D - 567 616 - -
Bda15g00506 679 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 563 617 IPR017930 -
Bda15g00506 679 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 18 676 - -
Bda15g00506 679 CDD SANT 465 509 IPR001005 -
Bda15g00506 679 Gene3D - 462 512 - -
Bda15g00506 679 ProSiteProfiles Myb-like domain profile. 511 562 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00506 K09422 MYBP; transcription factor MYB, plant - qsu:112030773 789.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00506 Bda-Chr15:8145613 Bda03g01467 Bda-Chr3:52603883 3.40E-13 dispersed
Bda15g00506 Bda-Chr15:8145613 Bda05g00965 Bda-Chr5:58137792 1.57E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g236 Blo04g00842 Blo16g00123 . Bda15g00506 Bpe12g00703 Bpe13g00370 Bma06g00058 . . . Cma10g00321 Cma11g00302 Car10g00301 Car11g00276 Sed08g2632 . Cpe04g01381 Bhi02g00121 Tan09g1843 Cmetu09g0775 . Hepe09g0374 . . Cla06g01433 Cam06g1587 Cec06g1647 Cco06g1639 Clacu06g1548 Cmu06g1503 Cre06g2312 Cone2ag0750 . . . . . . . Blo13g00177 . . . . Bpe15g00520 Bma03g00908 Bma08g00007 . Cmo10g00344 Cmo11g00305 . . . . . . . . . . . . . . . . . . . . Lsi06g01300 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda15g00506 . 183 661 MYB-Related Transcription Factor Family AT3G18100 55.2 2.4e-149 526.2
Bda12g00337 . 1 829 MYB-Related Transcription Factor Family AT1G09770 74.9 0.0e+00 1175.2
Bda07g01179 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.5 0.0e+00 1150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17172 PF00249 Myb_DNA-binding 2.70E-10 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00506 Bda_Chr15 FPKM 41.949905 46.12093 40.675766 41.974655 33.79636 34.968632 36.469505 52.802776 48.915089