Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00512 ATGAGAAGGGCTTCGACTCTCGCCTCTTCCTTCATCTCTCGTACGCTTTGCAGGACCTCCGCCGGCGCTTCCTCCTCTGCTACGTTGAATAACCGCGTCTTTCAGGTGAAGCTGTTTTGTAGCAGTAGCATCGGCGGTGCAAACAGTCGTCGGAGTTGGTTCTCTCCTATTCTAAATTATGTTTCCGGTGGTTCAACTCGAGCTGCGTCTCTTGCAATCTCCGGTGCTCTAGCTTCTATAGGCGCTGCGACGGCGCTCTCCCAGGAGGTCTACGCAAAAGAGCCGGTGCAGTCTGATCTTGTTCCTAAGGAGGTTGTGCTTTATCAGTATGAAGCTTGCCCTTTTTGCAATAAGGTTAAAGCATTTTTGGATTATTATGATATACCTTACAAAGTCGTGGAGGTCAACCCAATCAGTAAGAAAGAAATTAATTGGTCCGATTATAAGAAGGTTCCAATATTGATGATCAATGGCGAACAGCTAGTTGATTCTTCAGTTATAATTGATAAGTTGGTAAACAAGATTCAACCCTCGAAAAAATTACAGATAACCACTGGCTCGGATGATGATGATGAAGAGAAAAAATGGCGTGGGTGGGTCGATAATCACTTGGTGCATGTCTTGTCACCAAACATATATCGAAATACTTCAGAGGCCCTTGAATCATTCGACTATATCACAAGCAATGGAAATTTCAGCTTCACTGAAAAACTTACAGTGAAATATGCTGGAGCTGCAGCTATGTATTTTGTCTCAAAAAATCTGAAGAAGAAATATAACATCACCGATGAACGTGCAGCCCTATATGAAGCAGCAGAAACATGGGTGGAAGCGTTAAACGGAAGAGACTTCCTCGGGGGAGCAAAACCCAATTTAGCAGATCTTGCTGTTTTTGGGGTGCTAAGACCAATCCGTTACTTGAGGAAATTGAAGACACGCGTGATCAAGAAGAATGTTAATCCTGAGTGGAATGAAGATTTGACATTTCCTGTCACGGATCCTAATATTCCTCTTAAGCTGGAAAGTATTTTGCACGTACAGAGTGTATATGATCACGACACGTTTACCAGGGATGACAAAATGGGAGACGCAGAAGTGGACATAAAACAATTTGCAGAAGCTCTCAAGATGAAATTTGAAGGCCTTCCTAATGGCACTGTCATCTCAAGAATACAACCCAACAGGCAAAACGACGTGGCCGAGGAGAGCAGCATTGTGTGGATGAATGGGAACGTTGAACAAGATCTGTTCCTCCGGTTGAGGAATGTCGAATGCGGCGAGCTAGAAATACAATTGAAATGGATCGATCTGCCAGGTTCTAAGGGGTAA 1329 43.87 MRRASTLASSFISRTLCRTSAGASSSATLNNRVFQVKLFCSSSIGGANSRRSWFSPILNYVSGGSTRAASLAISGALASIGAATALSQEVYAKEPVQSDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPISKKEINWSDYKKVPILMINGEQLVDSSVIIDKLVNKIQPSKKLQITTGSDDDDEEKKWRGWVDNHLVHVLSPNIYRNTSEALESFDYITSNGNFSFTEKLTVKYAGAAAMYFVSKNLKKKYNITDERAALYEAAETWVEALNGRDFLGGAKPNLADLAVFGVLRPIRYLRKLKTRVIKKNVNPEWNEDLTFPVTDPNIPLKLESILHVQSVYDHDTFTRDDKMGDAEVDIKQFAEALKMKFEGLPNGTVISRIQPNRQNDVAEESSIVWMNGNVEQDLFLRLRNVECGELEIQLKWIDLPGSKG 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8183462 8196227 - Bda012341.2 Bda15g00512 22207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00512 442 Pfam Glutathione S-transferase, N-terminal domain 107 173 IPR004045 -
Bda15g00512 442 ProSitePatterns Glutaredoxin active site. 107 123 IPR011767 -
Bda15g00512 442 Gene3D - 185 331 - -
Bda15g00512 442 SFLD Prostaglandin E synthase like.1 46 325 IPR034334 GO:0050220
Bda15g00512 442 SUPERFAMILY GST C-terminal domain-like 183 320 IPR036282 -
Bda15g00512 442 CDD GST_N_mPGES2 104 176 - -
Bda15g00512 442 PANTHER PROSTAGLANDIN E SYNTHASE 2-RELATED 1 319 - -
Bda15g00512 442 SFLD Prostaglandin E synthase like 46 325 - -
Bda15g00512 442 SUPERFAMILY Thioredoxin-like 104 179 IPR036249 -
Bda15g00512 442 SMART C2_3c 258 380 IPR000008 -
Bda15g00512 442 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 103 179 IPR004045 -
Bda15g00512 442 ProSiteProfiles C2 domain profile. 253 381 IPR000008 -
Bda15g00512 442 PANTHER MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 1 319 - -
Bda15g00512 442 Gene3D Glutaredoxin 95 176 - -
Bda15g00512 442 ProSiteProfiles Glutaredoxin domain profile. 93 188 - -
Bda15g00512 442 CDD GST_C_mPGES2 188 311 IPR034335 -
Bda15g00512 442 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 307 377 IPR035892 -
Bda15g00512 442 Pfam C2 domain 308 372 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00512 K05309 PTGES2; microsomal prostaglandin-E synthase 2 [EC:5.3.99.3] - vvi:100266342 440.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00822 Bda15g00512 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda06g00822 Bda-Chr6:11457141 Bda15g00512 Bda-Chr15:8183462 0 dispersed
Bda08g01209 Bda-Chr8:49615821 Bda15g00512 Bda-Chr15:8183462 1.44E-112 dispersed
Bda15g00512 Bda-Chr15:8183462 Bda14g00936 Bda-Chr14:7438576 7.73E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g197 . . Bda06g00822 Bda15g00512 Bpe12g00695 . . Bma12g01245 . . Cma10g00331 Cma11g00316 Car10g00313 Car11g00291 . . Cpe04g01366 Bhi02g00150 Tan09g1812 . . Hepe09g0396 . . Cla06g01416 Cam06g1569 Cec06g1629 Cco06g1621 Clacu06g1531 Cmu06g1485 Cre06g2294 . . . Cone19ag0335 . . . . Blo13g00171 Blo15g00058 . . Bpe07g01049 . . Bma08g00057 . Cmo10g00357 . . . . . . . . . . . . . . . . . . . . . Lsi06g01278 Csa01g00439 Chy02g02306 Cme02g01677
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001449 3 2 2 3 3 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 4 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00512 Bda_Chr15 FPKM 19.593849 18.67775 21.174049 21.081644 14.204008 13.009049 12.889267 23.055357 23.144854