Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00518 ATGGCAGATGCAGTGGATTCAGGAGCTGTTCTTTCCACCGAGCGCAAGAGCTCTCCGTACAAAGAGCGATGCGTAATGGGTAAGTTTCGAAAACGGTGTCGGAGATTAAGGTCCACTTCGGAAACAACCCGGGTATCCGATCGGCGCCGGAACTTACACTCTTCGAATAGATTTGAGGCGTTTCTTTCTTGTTCTTCGTCTCGAACACTTCAAATTAAAAGACGGAGGAAATACGCTTCCCGGAACGATTCTCGCAAATGGGTTTTCTCTGCCCTAGACTGCTCAAGATATAAAGATAGGGTTGTGATTGTGTCATATAACATATTAGGAGTGGACAATGCTTTAAAGCACCCAGATTTGTATTTCAACGTGCCACCAAAGTTTTTGGAGTGGAATCAGCGTAAAAAAATTATTAGGGAAGAAATTATTGATTATAATGCAAGCATATTGTGCTTTCAGGAGGTTGATCGTTTTAATGATTTAGTCTCTCTTTTCGGAGAGGATGGATATAAAGGTATTTATAAGGCTAGAACTGGTGAAGCATGTGATGGATGTGCCATATTTTGGAAAGAAAAACTATATACCCTTCTGCATCAAGAGAATATAGAATTTCAGAGTTTTGATCTTCGCCACAACGTTGCTCAACTTTGCATTTTAAAGATGAATCATACAAAGTCAGAGTCTAATTTTGTCAATCTAACATCAAATCGATGCCTATTGATTGGGAATATACATGTGCTCTTCAACCCAAACCGTGGAGACATCAAGCTGGGTCAGATACGGCTATTTCTTGAAAGAGCTTACAAACTATCAAGGGAATGGGGCGTTATACCCGTTGTTCTTGCTGGGGATCTGAATAGTATTCCAAAGAGTGCAATTTACCAGTTTCTGTCATCCTCTGAGCTCAATGTTCAATTACATGACCGCAGAAATATTTCTGGCCAACTTGAGTTTTCATCTCATTTTCAAGCCTTCAAAGAGCCAAAAAAGAATATTTCCAGGCCATTTTTATGTGCATGGAGCGATGATGAGTTGAGGACTGCAACCGGTTGTGAAAGTGTTACTCATATTCAACACCATCTCAAGCTTAATAGTGCTTATCTAGGGATTCCGGGAAGTGTTAAAACGAGAGACATCAATGGGGAACCTTTGGTGACATCATACCACTCGAAGTTCATGGGAACCGTTGATTATATTTGGCATTCCGCAGAGCTTGTTCCTGTCAGAGTGTTAGAAACATTACCCCTCAAAATACTGAGGAAAACTGAGGGGCTCCCAAATAAGAAATATGGCAGCGATCATCTTGCTCTTGTTTGTGAATTGGCTTTTGCAGACTCTGAACCTTAG 1347 40.98 MADAVDSGAVLSTERKSSPYKERCVMGKFRKRCRRLRSTSETTRVSDRRRNLHSSNRFEAFLSCSSSRTLQIKRRRKYASRNDSRKWVFSALDCSRYKDRVVIVSYNILGVDNALKHPDLYFNVPPKFLEWNQRKKIIREEIIDYNASILCFQEVDRFNDLVSLFGEDGYKGIYKARTGEACDGCAIFWKEKLYTLLHQENIEFQSFDLRHNVAQLCILKMNHTKSESNFVNLTSNRCLLIGNIHVLFNPNRGDIKLGQIRLFLERAYKLSREWGVIPVVLAGDLNSIPKSAIYQFLSSSELNVQLHDRRNISGQLEFSSHFQAFKEPKKNISRPFLCAWSDDELRTATGCESVTHIQHHLKLNSAYLGIPGSVKTRDINGEPLVTSYHSKFMGTVDYIWHSAELVPVRVLETLPLKILRKTEGLPNKKYGSDHLALVCELAFADSEP 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8256725 8263425 + Bda012348.1 Bda15g00518 22213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00518 448 Gene3D Endonuclease/exonuclease/phosphatase 74 447 IPR036691 -
Bda15g00518 448 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 55 443 - -
Bda15g00518 448 PANTHER PROTEIN ANGEL 55 443 - -
Bda15g00518 448 Pfam Endonuclease/Exonuclease/phosphatase family 104 434 IPR005135 GO:0003824
Bda15g00518 448 SUPERFAMILY DNase I-like 100 442 IPR036691 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00518 - - - vvi:100252635 540.036
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00728 Bda-Chr1:34592933 Bda15g00518 Bda-Chr15:8256725 1.33E-25 dispersed
Bda03g00640 Bda-Chr3:5457089 Bda15g00518 Bda-Chr15:8256725 4.06E-28 dispersed
Bda06g00878 Bda-Chr6:12064547 Bda15g00518 Bda-Chr15:8256725 1.14E-09 dispersed
Bda15g00518 Bda-Chr15:8256725 Bda15g00565 Bda-Chr15:8819398 0 dispersed
Bda15g00518 Bda-Chr15:8256725 Bda15g00522 Bda-Chr15:8283080 2.07E-109 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g332 . . . Bda15g00518 . . . . . . Cma10g00237 . Car10g00224 . . . . . . . . . . . Cla06g01472 Cam06g1625 Cec06g1688 Cco06g1681 Clacu06g1590 Cmu06g1541 Cre06g2353 . . . Cone19ag0278 . . . . . . . . . . . Bma08g00064 . Cmo10g00252 . . . . . . . . . . . . . . . . . . . . . Lsi06g01335 . Chy02g02367 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006864 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 5 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00518 Bda_Chr15 FPKM 26.590942 28.274256 21.909847 20.539755 32.547611 34.507355 34.914207 36.385586 39.408974