Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00540 ATGGATCCGAATCCGAAAAGGTACCCAATCCTCTCTTACGTTATGGCCCGAATCCCCACTATCGGGCCTCGGACGTCCCCCGCCGCCTCCAATTTCAGCTCCCTCCAATTCGATGTAGAACAGCCGGACACGACCCCGCCTCGTCCGCCTGATCCTTCGGCGTCGTCTTTCGGTCAGATCGTCGACCACATGCCTCGTCTGTCGGACCCAAATGTTCTGGCTTCTATGACTCGCGCCGTGACGGACGTGGCTCAGACCCGATCTGTGCTCAAAACTCTCGGCGAAAGACCGGACCACGAGACAGTCGATACCGCCAAGGCTAAGCTCGCTGAGATCGAGGCTAATTTGTCTAAACAGCTTGAGGAGATAGTTCTTTCTCCGCGGCCTGTGGAATTGGATCGCTTCGAGTGGCGAGCTTACCAGACAGAGAAGGAGATGCTGTGCCGACAATCAGCCGAGAAGGAAAAGACGATTTATAAGGCGGTTATTCAGTTGGACGAGATGCATGAGGCATATGAAAAGTTGTTGAAGGAAGCTGAAGAGCGTTTGGTAAAGATTTACAAGTCGGCAGAGGGTGGGGAGGAAGAACAGTACGTGGCTCCAGTGACTGATGAGATTAATGAGGAGGTGGTTGGAATTCTTCATGATGCAAATGGCAATAAGATGGAGCGCATTGATATTTCCGGTCGCCGGTTGCGGATTTTGCCAGAAGCGTTCGGCCAAATTCGTTGCTTGACTCTGCTCAATGTTTCGAGTAATCAACTCCAGGTTATTCCTGACTCCATAGCTGGTTTGGAAAATCTCGAGGAGCTAAATGCCTCTATGAGATCTCTGTGCTATTTAGATGCCCATTTCAACGAGCTCCATGGGCTTCCACTTGCAATTGGGAGATTGGTTAATCTCGAGGTTCTCAACTTGAGCAGTAACTTCAGTGATCTGAAAGAACTTCCTGATACCCTTGGTGATTTAACCAATCTAAAGGAACTTGATCTCAGCAACAACCAGATTCAGGCTCTTCCCGATACGTTTGGTCGTCTTGACAATTTAGTCAAACTAAACTTGGACCAAAATCCTATTGTGATTCCACCCTTGGAAGTTGTGAAAGAAGGTGTAGAAGCAGTGAAAGTGTACATGGCCAAGAGATGGCTTGACCTTCTGGTGGAGGAAGAGGAAAAGAGCATGCTTGAAGAACAAGAAATGGGACAGACTGGATGGCTGACACGTAGCACTTCCTGGCTGAAGAGTTATGCTTCGGGTGTGACAGAATATTTGACATCTCCCAGAACTCCCAGAACTCCCCGGGACCCTTATCTCGATCAACAACTGTAG 1329 49.21 MDPNPKRYPILSYVMARIPTIGPRTSPAASNFSSLQFDVEQPDTTPPRPPDPSASSFGQIVDHMPRLSDPNVLASMTRAVTDVAQTRSVLKTLGERPDHETVDTAKAKLAEIEANLSKQLEEIVLSPRPVELDRFEWRAYQTEKEMLCRQSAEKEKTIYKAVIQLDEMHEAYEKLLKEAEERLVKIYKSAEGGEEEQYVAPVTDEINEEVVGILHDANGNKMERIDISGRRLRILPEAFGQIRCLTLLNVSSNQLQVIPDSIAGLENLEELNASMRSLCYLDAHFNELHGLPLAIGRLVNLEVLNLSSNFSDLKELPDTLGDLTNLKELDLSNNQIQALPDTFGRLDNLVKLNLDQNPIVIPPLEVVKEGVEAVKVYMAKRWLDLLVEEEEKSMLEEQEMGQTGWLTRSTSWLKSYASGVTEYLTSPRTPRTPRDPYLDQQL 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8473381 8475741 - Bda012373.1 Bda15g00540 22235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00540 442 PANTHER PLANT INTRACELLULAR RAS GROUP-RELATED LRR 9-RELATED 5 273 - -
Bda15g00540 442 PANTHER PLANT INTRACELLULAR RAS GROUP-RELATED LRR 9-RELATED 274 423 - -
Bda15g00540 442 Coils Coil 162 196 - -
Bda15g00540 442 MobiDBLite consensus disorder prediction 38 59 - -
Bda15g00540 442 PANTHER LEUCINE-RICH REPEAT-CONTAINING 5 273 - -
Bda15g00540 442 PANTHER LEUCINE-RICH REPEAT-CONTAINING 274 423 - -
Bda15g00540 442 SUPERFAMILY L domain-like 216 363 - -
Bda15g00540 442 Coils Coil 102 122 - -
Bda15g00540 442 MobiDBLite consensus disorder prediction 423 442 - -
Bda15g00540 442 Gene3D Ribonuclease Inhibitor 276 378 IPR032675 -
Bda15g00540 442 Gene3D Ribonuclease Inhibitor 138 275 IPR032675 -
Bda15g00540 442 SMART LRR_typ_2 323 346 IPR003591 -
Bda15g00540 442 SMART LRR_typ_2 242 265 IPR003591 -
Bda15g00540 442 SMART LRR_typ_2 275 298 IPR003591 -
Bda15g00540 442 SMART LRR_bac_2 323 342 - -
Bda15g00540 442 SMART LRR_bac_2 298 319 - -
Bda15g00540 442 SMART LRR_bac_2 245 261 - -
Bda15g00540 442 ProSiteProfiles Leucine-rich repeat profile. 325 346 IPR001611 GO:0005515
Bda15g00540 442 Pfam Leucine rich repeat 317 359 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00540 - - - mcha:111007310 387.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda06g00618 Bda15g00540 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda07g01633 Bda-Chr7:30354539 Bda15g00540 Bda-Chr15:8473381 5.37E-81 dispersed
Bda07g01636 Bda-Chr7:30495735 Bda15g00540 Bda-Chr15:8473381 6.44E-81 dispersed
Bda09g00704 Bda-Chr9:11201097 Bda15g00540 Bda-Chr15:8473381 5.33E-06 dispersed
Bda15g00540 Bda-Chr15:8473381 Bda10g01167 Bda-Chr10:45684342 7.61E-09 dispersed
Bda15g00540 Bda-Chr15:8473381 Bda06g00618 Bda-Chr6:8452801 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00540 Bda_Chr15 FPKM 7.820269 8.765147 1.185157 1.159835 2.230541 1.87565 2.257449 0.692447 0.889438