Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00544 ATGGAGGATCAAGCTCTGGGAGGAGCATCACTCCCCTCTGGGCCAGACGGGAAGAAGCGAAGAGTCACCTACTTCTACGAACCCTCCATCGGCGACTACTACTATGGCCAGAGCCATCCTATGAAACCTCACCGAATCCGAATGGCTCACAACTTAGTAGTTCACTACGGTCTTCACCGTCGGATGGAGATTAACCGCCCTTTTCCTGCTGAAAAGGAAGACATACGCCGATTTCACTCCGACGACTACGTCAATTTTATCGCCTCCATCGTCCCCGAGACGATTTCTGATAATAACTCCTCCTCTCGCTACCACAAGCGCTTCAATGTCGGAGAGGATTGCCCCGTTTTCGACGGTCTTTTTGGGTTTTGCCAGGCGTCTGCTGGGGGCTCTATTGGGGCAGCCGTTAAACTCAATCGTGGGGATGCTGATATCGCGATTAATTGGGCTGGCGGACTACATCATGCTAAGAAAGCTGAAGCCTCCGGCTTCTGTTATGTTAATGATATTGTTCTTGGTATTCTTGAGCTCTTAAAGCACCACAGGCGTGTTTTATATGTGGACATTGACGTCCATCATGGCGACGGTGTTGAAGAGGCTTTTTACACTACTGACAGAGTAATGACTGTTTCATTTCATAAATATGGTGATTTCTTTCCTGGAACTGGACACATTAGGGACGTCGGTGCAGGACCTGGGAAAAACTATGCACTTAACGTACCTTTAAATGATGGAATGGATGATGAAAGTTTTCGTGGTTTATTTCGGCCCATAATGGAGAAAGTTATGGAGGTTTACCAACCAGATGCAGTTGTTCTCCAATGCGGAGCAGATTCTTTATCGGGTGATAGGTTGGGATGCTTCAACTTATCTGTAAGGGGTCATGCCGATTGTCTTCGTTACCTGAGGTCTTTCAATGTTCCTCTAATGGTTTTGGGCGGTGGAGGGTATACAATTCGAAATGTGGCCCGGTGCTGGTGTTATGAGGGTTCTTCATGCTACCAGACAGCTGTTGCAGTTGGGGTGGAACCTGACAATAGGTTGCCCTACAATGAGTATTATGAGTATTTTGGCCCAGATTATACTCTTCACATCGAACCCTCTAACATGGAAAATCTAAACTCAGTCAAAGATATGGATAAAATAAGGAACATGCTGTTGGAGCAACTATCTAGACTTCCTCATGCACCCAGCGTATCCTTCCAAATGACTCCACCCACAACAGAAGTTCCCGAGGAGGAAGAAGAGGACATGGAGCGTAGACCCAAACGTCGCATTTGGAATGGCGAAGACTATGAGTCCGATACAGATGAAGACATGAAGCACCAACTCAATACAAATGGGCCTGTTACAAACTCAGAAACTAGGTAG 1371 46.75 MEDQALGGASLPSGPDGKKRRVTYFYEPSIGDYYYGQSHPMKPHRIRMAHNLVVHYGLHRRMEINRPFPAEKEDIRRFHSDDYVNFIASIVPETISDNNSSSRYHKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKHHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGHIRDVGAGPGKNYALNVPLNDGMDDESFRGLFRPIMEKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVRGHADCLRYLRSFNVPLMVLGGGGYTIRNVARCWCYEGSSCYQTAVAVGVEPDNRLPYNEYYEYFGPDYTLHIEPSNMENLNSVKDMDKIRNMLLEQLSRLPHAPSVSFQMTPPTTEVPEEEEEDMERRPKRRIWNGEDYESDTDEDMKHQLNTNGPVTNSETR 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8497047 8499492 - Bda012377.1 Bda15g00544 22239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00544 456 PANTHER HISTONE DEACETYLASE 6 7 443 - -
Bda15g00544 456 PANTHER HISTONE DEACETYLASE 7 443 - -
Bda15g00544 456 SUPERFAMILY Arginase/deacetylase 20 392 IPR023696 -
Bda15g00544 456 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Bda15g00544 456 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Bda15g00544 456 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Bda15g00544 456 CDD HDAC_classI 25 339 - -
Bda15g00544 456 MobiDBLite consensus disorder prediction 416 442 - -
Bda15g00544 456 PIRSF HDAC_I_euk 7 455 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Bda15g00544 456 MobiDBLite consensus disorder prediction 396 456 - -
Bda15g00544 456 Pfam Histone deacetylase domain 39 328 IPR023801 -
Bda15g00544 456 Gene3D Histone deacetylase domain 12 405 IPR037138 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00544 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - csv:101204443 790.801
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00617 Bda-Chr1:33163066 Bda15g00544 Bda-Chr15:8497047 3.78E-07 dispersed
Bda07g01965 Bda-Chr7:37104122 Bda15g00544 Bda-Chr15:8497047 7.05E-46 dispersed
Bda12g00596 Bda-Chr12:17210653 Bda15g00544 Bda-Chr15:8497047 5.15E-156 dispersed
Bda15g00544 Bda-Chr15:8497047 Bda15g00660 Bda-Chr15:10062218 8.04E-22 dispersed
Bda15g00544 Bda-Chr15:8497047 Bda10g00379 Bda-Chr10:35433119 1.26E-19 transposed
Bda15g00544 Bda-Chr15:8497047 Bda10g00405 Bda-Chr10:36169169 1.26E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g359 Blo04g00809 . . Bda15g00544 Bpe12g00667 . . . . . Cma10g00300 . Car10g00285 . . . . . . . . . . . . . . . . . . . . Cone13ag0296 . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00322 . . . . . . . . . . . . . . . . . . . . . . Csa01g00287 Chy02g02448 .
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00544 Bda_Chr15 FPKM 5.57197 6.40501 7.402906 7.11632 3.856737 3.981164 5.280665 4.32148 4.382007