Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00546 ATGTGTAGGAAAAGATTGTTGAATCTAAAAGCATTGAATTTTCTTACACAATTGGTGTTTGAGAGGAAGATGTTGTGCAGCAAAAAATCTCAGGAAATGGCTTCATCAAGCTCATACAATTCACCATGTGCGGCCTGCAAGTTCTTGAGGAGAAAGTGTATGCCCGGCTGCATATTTGCGCCGTATTTCCCACCCGAGGAGCCTCAGAAGTTCGCCAACGTCCACAAGATATTCGGAGCCAGCAATGTTACCAAGCTCCTCAACGAACTCCTCCCCCACCAACGCGAAGACGCCGTGAATTCCCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCCGTCTACGGCTGCGTCGGAGCCATCTCCTTCCTCCAACGCCAAGTCCAACGGCTTCAGAAAGAGCTCGATGCCGCCAATGCCGACCTCATCCGCTACGCTTGCTCTGAGATCCCTTCCTCCATCTCCGCACCGTCCGGGGTAAGCGTGTTTGGCCGGAGAGGCGGAAACAGAGGAGGAGGTGGCGGAGGAGGAGGGTATCATCAGCCTCCTCCTTTCCCTATGCCCTATCCCATACCTTGGAATGATGATGAGGACATCCATGGAGGAGGAGGAGCAGATCCAGGGAGTATGTGA 633 53.55 MCRKRLLNLKALNFLTQLVFERKMLCSKKSQEMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACSEIPSSISAPSGVSVFGRRGGNRGGGGGGGGYHQPPPFPMPYPIPWNDDEDIHGGGGADPGSM 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8519291 8519923 + Bda012379.1 Bda15g00546 22241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00546 210 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Bda15g00546 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 206 - -
Bda15g00546 210 Coils Coil 121 148 - -
Bda15g00546 210 MobiDBLite consensus disorder prediction 164 210 - -
Bda15g00546 210 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Bda15g00546 210 PANTHER ELONGATED PETIOLULE 1 33 206 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda11g01663 Bda15g00546 CCT
Bda11g01663 Bda15g00546 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01663 Bda-Chr11:50732063 Bda15g00546 Bda-Chr15:8519291 1.42E-78 dispersed
Bda13g01832 Bda-Chr13:42352205 Bda15g00546 Bda-Chr15:8519291 9.24E-58 dispersed
Bda14g01169 Bda-Chr14:11021002 Bda15g00546 Bda-Chr15:8519291 7.27E-74 dispersed
Bda14g01228 Bda-Chr14:12457879 Bda15g00546 Bda-Chr15:8519291 7.41E-46 dispersed
Bda15g00282 Bda-Chr15:5610058 Bda15g00546 Bda-Chr15:8519291 1.52E-48 dispersed
Bda15g00546 Bda-Chr15:8519291 Bda01g01103 Bda-Chr1:45777636 8.00E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17176 PF03195 LOB 3.90E-42 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00546 - - tcc:18604002 274.633