Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00550 ATGGATGATCTCTACGCAATCCATTCACCTGAAGATTACTCCGTTCAGTCTCGTATTGCACTGCCGGAGAACAACCTATTTCCTGTCAATCATCAACTTTCTTACTCGGGTAATTTGGATCTTTTGGATTTTGGGTCAGAGCACTTGTTGCCTTCGGCGGTGTCTGACGCTGGTTCTGTTGCGGCGGAGATACAAAGAGCAGCTCCCGTGGAAGAGGAGATGATCACTGATGGAGTTAGAACGAAAATTGCTTCCCATCCTCTTTACCCTAAGCTTCTCGACGCTTATATCGATTGCCAGAAGGTGGGTGCGCCGCCGGAGATAGCGTACCTGCTGGACGAAATCCGACTAGGAACCACCGCCATGTCAACTTGTTACGGTGATGATCCAGAACTGGACGAGTTCATGGACAAGTATTGCAGGATATTGGTCAAGTATAAATCAGATCTCTCCCGGCCTTTTGAGGAAGCATCCTCTTTTCTGAACAAAATTGAAACGCAGCTCAAAACCCTTTGCAATGGCGCCTCTAGAAGCTACGTTACTGATGAAGTTGCCAATTCTTCGGATGAAGATTTAAGCACAAGAGAGACGGAGTTGGAGTGTCCTCCGACGAACGAAGATCGTGAGCTTAAGGATAAACTTTTACGCAAATACAGTGGTTATATCACTACCCTAAAGCAGGAGTTTTCGAAGAAGAAAAAGAAAGGGAAACTACCAAAGGAAGCTAGGCAAAACTTGCTGGATTGGTGGAATGTCCATTACAAATGGCCTTACCCTACGGAGGCGGATAAAGTTTTGTTGGCGGAATCGACGGGGTTGGACCAGAAACAGATAAACAACTGGTTTATAAACCAAAGAAAACGCCATTGGAGACCATCGGAAAACATGCAATTTGCAGTCATGGACAGTCTATATGGACCTTTTTTGATGAAGGGATGA 939 45.58 MDDLYAIHSPEDYSVQSRIALPENNLFPVNHQLSYSGNLDLLDFGSEHLLPSAVSDAGSVAAEIQRAAPVEEEMITDGVRTKIASHPLYPKLLDAYIDCQKVGAPPEIAYLLDEIRLGTTAMSTCYGDDPELDEFMDKYCRILVKYKSDLSRPFEEASSFLNKIETQLKTLCNGASRSYVTDEVANSSDEDLSTRETELECPPTNEDRELKDKLLRKYSGYITTLKQEFSKKKKKGKLPKEARQNLLDWWNVHYKWPYPTEADKVLLAESTGLDQKQINNWFINQRKRHWRPSENMQFAVMDSLYGPFLMKG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8647777 8652926 - Bda012387.1 Bda15g00550 22245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00550 312 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 311 - -
Bda15g00550 312 Pfam Homeobox KN domain 249 288 IPR008422 GO:0003677|GO:0006355
Bda15g00550 312 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 42 311 - -
Bda15g00550 312 Gene3D - 226 300 - -
Bda15g00550 312 CDD homeodomain 241 293 IPR001356 GO:0003677
Bda15g00550 312 ProSitePatterns 'Homeobox' domain signature. 267 290 IPR017970 GO:0000981|GO:0006355
Bda15g00550 312 ProSiteProfiles 'Homeobox' domain profile. 229 292 IPR001356 GO:0003677
Bda15g00550 312 SMART KNOX1_2 77 121 IPR005540 GO:0003677|GO:0005634
Bda15g00550 312 SMART KNOX2_2 122 173 IPR005541 GO:0003677|GO:0005634
Bda15g00550 312 Pfam KNOX1 domain 80 116 IPR005540 GO:0003677|GO:0005634
Bda15g00550 312 ProSiteProfiles ELK domain profile. 209 229 IPR005539 GO:0003677
Bda15g00550 312 MobiDBLite consensus disorder prediction 183 204 - -
Bda15g00550 312 SMART HOX_1 231 296 IPR001356 GO:0003677
Bda15g00550 312 MobiDBLite consensus disorder prediction 188 204 - -
Bda15g00550 312 SMART ELK_2 209 230 IPR005539 GO:0003677
Bda15g00550 312 SMART ELK_2 131 151 IPR005539 GO:0003677
Bda15g00550 312 Pfam KNOX2 domain 126 172 IPR005541 GO:0003677|GO:0005634
Bda15g00550 312 Pfam ELK domain 209 230 IPR005539 GO:0003677
Bda15g00550 312 SUPERFAMILY Homeodomain-like 230 305 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00153 Bda-Chr3:1277899 Bda15g00550 Bda-Chr15:8647777 3.54E-87 dispersed
Bda06g00867 Bda-Chr6:11933162 Bda15g00550 Bda-Chr15:8647777 2.67E-12 dispersed
Bda09g01593 Bda-Chr9:47367375 Bda15g00550 Bda-Chr15:8647777 5.04E-84 dispersed
Bda11g01278 Bda-Chr11:13413309 Bda15g00550 Bda-Chr15:8647777 9.11E-83 dispersed
Bda14g00697 Bda-Chr14:5191751 Bda15g00550 Bda-Chr15:8647777 4.15E-77 dispersed
Bda15g00550 Bda-Chr15:8647777 Bda01g00605 Bda-Chr1:33054749 2.82E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17177 PF03791 KNOX2 2.10E-23 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00550 - - vvi:100243290 420.624