Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda15g00550 | ATGGATGATCTCTACGCAATCCATTCACCTGAAGATTACTCCGTTCAGTCTCGTATTGCACTGCCGGAGAACAACCTATTTCCTGTCAATCATCAACTTTCTTACTCGGGTAATTTGGATCTTTTGGATTTTGGGTCAGAGCACTTGTTGCCTTCGGCGGTGTCTGACGCTGGTTCTGTTGCGGCGGAGATACAAAGAGCAGCTCCCGTGGAAGAGGAGATGATCACTGATGGAGTTAGAACGAAAATTGCTTCCCATCCTCTTTACCCTAAGCTTCTCGACGCTTATATCGATTGCCAGAAGGTGGGTGCGCCGCCGGAGATAGCGTACCTGCTGGACGAAATCCGACTAGGAACCACCGCCATGTCAACTTGTTACGGTGATGATCCAGAACTGGACGAGTTCATGGACAAGTATTGCAGGATATTGGTCAAGTATAAATCAGATCTCTCCCGGCCTTTTGAGGAAGCATCCTCTTTTCTGAACAAAATTGAAACGCAGCTCAAAACCCTTTGCAATGGCGCCTCTAGAAGCTACGTTACTGATGAAGTTGCCAATTCTTCGGATGAAGATTTAAGCACAAGAGAGACGGAGTTGGAGTGTCCTCCGACGAACGAAGATCGTGAGCTTAAGGATAAACTTTTACGCAAATACAGTGGTTATATCACTACCCTAAAGCAGGAGTTTTCGAAGAAGAAAAAGAAAGGGAAACTACCAAAGGAAGCTAGGCAAAACTTGCTGGATTGGTGGAATGTCCATTACAAATGGCCTTACCCTACGGAGGCGGATAAAGTTTTGTTGGCGGAATCGACGGGGTTGGACCAGAAACAGATAAACAACTGGTTTATAAACCAAAGAAAACGCCATTGGAGACCATCGGAAAACATGCAATTTGCAGTCATGGACAGTCTATATGGACCTTTTTTGATGAAGGGATGA | 939 | 45.58 | MDDLYAIHSPEDYSVQSRIALPENNLFPVNHQLSYSGNLDLLDFGSEHLLPSAVSDAGSVAAEIQRAAPVEEEMITDGVRTKIASHPLYPKLLDAYIDCQKVGAPPEIAYLLDEIRLGTTAMSTCYGDDPELDEFMDKYCRILVKYKSDLSRPFEEASSFLNKIETQLKTLCNGASRSYVTDEVANSSDEDLSTRETELECPPTNEDRELKDKLLRKYSGYITTLKQEFSKKKKKGKLPKEARQNLLDWWNVHYKWPYPTEADKVLLAESTGLDQKQINNWFINQRKRHWRPSENMQFAVMDSLYGPFLMKG | 312 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8647777 | 8652926 | - | Bda012387.1 | Bda15g00550 | 22245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda15g00550 | 312 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 42 | 311 | - | - | |
Bda15g00550 | 312 | Pfam | Homeobox KN domain | 249 | 288 | IPR008422 | GO:0003677|GO:0006355 | |
Bda15g00550 | 312 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 | 42 | 311 | - | - | |
Bda15g00550 | 312 | Gene3D | - | 226 | 300 | - | - | |
Bda15g00550 | 312 | CDD | homeodomain | 241 | 293 | IPR001356 | GO:0003677 | |
Bda15g00550 | 312 | ProSitePatterns | 'Homeobox' domain signature. | 267 | 290 | IPR017970 | GO:0000981|GO:0006355 | |
Bda15g00550 | 312 | ProSiteProfiles | 'Homeobox' domain profile. | 229 | 292 | IPR001356 | GO:0003677 | |
Bda15g00550 | 312 | SMART | KNOX1_2 | 77 | 121 | IPR005540 | GO:0003677|GO:0005634 | |
Bda15g00550 | 312 | SMART | KNOX2_2 | 122 | 173 | IPR005541 | GO:0003677|GO:0005634 | |
Bda15g00550 | 312 | Pfam | KNOX1 domain | 80 | 116 | IPR005540 | GO:0003677|GO:0005634 | |
Bda15g00550 | 312 | ProSiteProfiles | ELK domain profile. | 209 | 229 | IPR005539 | GO:0003677 | |
Bda15g00550 | 312 | MobiDBLite | consensus disorder prediction | 183 | 204 | - | - | |
Bda15g00550 | 312 | SMART | HOX_1 | 231 | 296 | IPR001356 | GO:0003677 | |
Bda15g00550 | 312 | MobiDBLite | consensus disorder prediction | 188 | 204 | - | - | |
Bda15g00550 | 312 | SMART | ELK_2 | 209 | 230 | IPR005539 | GO:0003677 | |
Bda15g00550 | 312 | SMART | ELK_2 | 131 | 151 | IPR005539 | GO:0003677 | |
Bda15g00550 | 312 | Pfam | KNOX2 domain | 126 | 172 | IPR005541 | GO:0003677|GO:0005634 | |
Bda15g00550 | 312 | Pfam | ELK domain | 209 | 230 | IPR005539 | GO:0003677 | |
Bda15g00550 | 312 | SUPERFAMILY | Homeodomain-like | 230 | 305 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00153 | Bda-Chr3:1277899 | Bda15g00550 | Bda-Chr15:8647777 | 3.54E-87 | dispersed | |
Bda06g00867 | Bda-Chr6:11933162 | Bda15g00550 | Bda-Chr15:8647777 | 2.67E-12 | dispersed | |
Bda09g01593 | Bda-Chr9:47367375 | Bda15g00550 | Bda-Chr15:8647777 | 5.04E-84 | dispersed | |
Bda11g01278 | Bda-Chr11:13413309 | Bda15g00550 | Bda-Chr15:8647777 | 9.11E-83 | dispersed | |
Bda14g00697 | Bda-Chr14:5191751 | Bda15g00550 | Bda-Chr15:8647777 | 4.15E-77 | dispersed | |
Bda15g00550 | Bda-Chr15:8647777 | Bda01g00605 | Bda-Chr1:33054749 | 2.82E-89 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17177 | PF03791 | KNOX2 | 2.10E-23 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda15g00550 | - | - | vvi:100243290 | 420.624 |