Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00553 ATGTCTGCCTCTTCCAGAGAAGCCGGGGTAGAAGCTTTAAACCTCCTTAAGTCGACAGACCCACCGGTGTGGTTAGCGCCTGATTCCTCTCTATCACATGCGGCTCGCACTGCCTCCCAGCACATTTTCTCTTCTCTCAGACCTTATGCTCCCAAATCCCCGTTCGATCACCTTTTGGTTGATGGATTCGATGCTGAGCAGATATGGCAACAAATCGATATCCAATCGCAGCCTATATTGTCGACTATCCGCCGAGATTTGAGGCGTTTCGAGAAGAACCCAGAAGAAATTTCGAACCTCAAGTTGGCTTTAGAGGTCGAGAAAAACAGTTTGGAAGATAAGTACGAGAGTTTGGATGATGACAACGATGGTTTTGATGAAAACATGGAAGAGCTTGATGAGGAAGATGAGGAGGAGGAGGAAGATAAAGAGGGAGACTGCCAAGATGAAGGAGAGGAAGACGACGAAAACAGCAATGAGAAACACATAGATAGAGAAGGTGGCGATAAAATTGAAGATGGATTCTTGAAAATTAAAGAATTGGAGGAGTTTTTGGAGGAGGATGAGGCAAGGGAATATGGACTAGAGAGTAATAACTCAAAGGAGAAGGAGAAGCAGAAGCAGAAGAAAAAGGAAGAAGGTACTAAGTTAAAGAAGAACAAAGCGTTTGGAGATTTTGGGATTGGTGATAATGAAGATGAAGACTTTGATGGACTGGGAAATGCAAGGTACAAAGACTTTTTTGGTGCTAAAAAGAAAGAGCCCGTAAGAAAACAATCAAAATTAACTGATGAGTCAGAAGATTCAGATATGGATGATGAAGAAGATGATGGAGACGAAGACTTGGCTACAGGCGGCGAAGAAGAAGATGATGGAGAAATTGCGACTCAGAAGCCGGAAAATCTTTCTACGCATGAAAAGCAGCTTAAGAAGCTGCAATCTGAGATACAGCAGATGGAAAATGCAAACTTGGAGCCAAAAACTTGGACCATGCAGGGAGAGGTATCGGCTGCAAAACGGCCAATGAACAGTGCTCTTGAAGTTGATCTAGATTTTGAGCACAATGTCAGACCAGTCCCTGTTATAACGGAGGAAGTTACAGCATCTCTTGAAGAGATGATCCGTAAAAGGATTATCGAGGGGCATTTCGATGACGTTCAAAAAGCACCTAGACTACCTCATGAAGCTCCAAAATTGGTCAAAGAGTTGGATGAAAATAAAAGCAAGAAGGGTTTGGGTGAAATTTACGAGGAAGAGTTTGTGCAGAAGACAAATTTAAACTCTGCCCCATTGTCAGTCTCTGATGTAATGAAGCAAGAGGCAAGCATGCTGTTCAAAAAGCTGTGTGTAAAGTTGGATGCCCTTTCACATTTTTACTTCACCCCGAAACCTGTCATTGAGGACATGTATGTACCAGCAAATATCCCTGCCTTGGCAATGGAAGAGATTGCTCCGACTGCAGTTTCAGATGCAGCCATGCTAGCTCCTGAGGAAGTTTTTTCTGGAAAAGGTGATTTCAAAGAAGAAACAGAACTCGATCGGTCAGAGAGGAAGAAGAGGAGAGCTAACAAGAAAAGGAGACACAGAGGTTAG 1593 43.31 MSASSREAGVEALNLLKSTDPPVWLAPDSSLSHAARTASQHIFSSLRPYAPKSPFDHLLVDGFDAEQIWQQIDIQSQPILSTIRRDLRRFEKNPEEISNLKLALEVEKNSLEDKYESLDDDNDGFDENMEELDEEDEEEEEDKEGDCQDEGEEDDENSNEKHIDREGGDKIEDGFLKIKELEEFLEEDEAREYGLESNNSKEKEKQKQKKKEEGTKLKKNKAFGDFGIGDNEDEDFDGLGNARYKDFFGAKKKEPVRKQSKLTDESEDSDMDDEEDDGDEDLATGGEEEDDGEIATQKPENLSTHEKQLKKLQSEIQQMENANLEPKTWTMQGEVSAAKRPMNSALEVDLDFEHNVRPVPVITEEVTASLEEMIRKRIIEGHFDDVQKAPRLPHEAPKLVKELDENKSKKGLGEIYEEEFVQKTNLNSAPLSVSDVMKQEASMLFKKLCVKLDALSHFYFTPKPVIEDMYVPANIPALAMEEIAPTAVSDAAMLAPEEVFSGKGDFKEETELDRSERKKRRANKKRRHRG 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8666053 8669247 - Bda012390.1 Bda15g00553 22248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00553 530 MobiDBLite consensus disorder prediction 266 290 - -
Bda15g00553 530 MobiDBLite consensus disorder prediction 505 530 - -
Bda15g00553 530 PIRSF snoRNP_Mpp10 9 530 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Bda15g00553 530 MobiDBLite consensus disorder prediction 191 228 - -
Bda15g00553 530 MobiDBLite consensus disorder prediction 113 172 - -
Bda15g00553 530 Pfam Mpp10 protein 50 529 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Bda15g00553 530 MobiDBLite consensus disorder prediction 116 157 - -
Bda15g00553 530 Coils Coil 101 142 - -
Bda15g00553 530 MobiDBLite consensus disorder prediction 236 265 - -
Bda15g00553 530 MobiDBLite consensus disorder prediction 187 309 - -
Bda15g00553 530 Coils Coil 200 220 - -
Bda15g00553 530 Coils Coil 302 325 - -
Bda15g00553 530 MobiDBLite consensus disorder prediction 158 172 - -
Bda15g00553 530 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 3 529 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00553 K14559 MPP10; U3 small nucleolar RNA-associated protein MPP10 - mnt:21386466 555.444
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g767 . . . Bda15g00553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0146 . . . . . . . . . . . . Bma08g00098 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010218 1 5 0 1 1 0 1 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00553 Bda_Chr15 FPKM 0.0 1.165929 1.27372 0.0 0.517566 0.92091 0.961411 1.819751 1.579128