Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00557 ATGGATGCGGCGAAGGTCTCGGAGTTGAAGCAATTTGTCGAGGACTGCAAAGCGAATCCTTCGCTCCTTCATAACCCTTCTCTTCGCTTCTTCAAAGAATATCTCATTAGCATCGGAGCGCAAATTCCGCCATACCCAAAAACCCCTTCTGGCGAGAAGATGTCCGACGTGAAGGAGAAATCTCATCCATTGAATGAAGTTGATGAGGATATTTGCGAGTCTGATATTGAGCTGGATGATACTGATGTGGTAGAGCCTGATCATGATCCTCCACAAAAGATGGGAGACCCTGCAGTCGAAGTCACGGAAGAAATGCAGGAAGCTGCACAAATAGCTAAATCCAAAGCTATATTAGCAATTTCTGAAGGTAATCTAGGAGAAGCCATTGATCATTTAACAGAAGCTATTACATTAAATCCATCCTCAGCAATATTATATGGTACTAGAGCTGGTGTATTTGTCAAATTAAAGAAACCAAATGCTGCAATTTGTGATGCTAATGCAGCTTTAGAGATCAATCCTGATTCAGCAAAAGGACATAAAATAAGAGGAATGGCGAGGGCGATGTTGGGTTATTGGGAAGAAGCCGCAGCTGATCTCCATGTAGCATCAAAACTAGATTATGATGAAGAAATCGGCAAGACCCTTAAAAAGGTTGAACCAAATGCACTCAAAATCGAGAAGCATCGTAGAAAATATGAACGCCTACGAAAAGAGAGGGAGCTTAAAAAGGTTGAATGTGACCGGCAGCGGCAGGAATCTGAGGCCAAAGTAAGAATCTCTTTTGATGCCCCTATAAAAAAGCCATTATGGTCAAGTGAAGTGATTGGAGTTCATTCAAATGGTGAACTGGAAACATCTCGCCTCTCGATACTCTACTTTACAGCGACATGGTGCGGGCCATGCCGTTTTATTTCTCCGGTATACACCAGCTTGGCCGGAAAATATCCAAAACTGGTTTTCTTGAAGGCTGACATTGACGAAGCCAAAGACGTGGCTGCTCGCTGGAACATAAGCAGTGTCCCGACGTTTTTCTTCATCAAGAATGGAAAAGAGGTCGATAAGGTGGTCGGAGCCGATAAAAGTTCACTCGAAAGGAAGATTGCGCAACACGCAACCTCAATGTGA 1128 43.53 MDAAKVSELKQFVEDCKANPSLLHNPSLRFFKEYLISIGAQIPPYPKTPSGEKMSDVKEKSHPLNEVDEDICESDIELDDTDVVEPDHDPPQKMGDPAVEVTEEMQEAAQIAKSKAILAISEGNLGEAIDHLTEAITLNPSSAILYGTRAGVFVKLKKPNAAICDANAALEINPDSAKGHKIRGMARAMLGYWEEAAADLHVASKLDYDEEIGKTLKKVEPNALKIEKHRRKYERLRKERELKKVECDRQRQESEAKVRISFDAPIKKPLWSSEVIGVHSNGELETSRLSILYFTATWCGPCRFISPVYTSLAGKYPKLVFLKADIDEAKDVAARWNISSVPTFFFIKNGKEVDKVVGADKSSLERKIAQHATSM 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8687777 8691183 - Bda012394.2 Bda15g00557 22252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00557 375 Pfam Hsp70-interacting protein N N-terminal domain 2 43 IPR034649 GO:0046983
Bda15g00557 375 Gene3D Tetratricopeptide repeat domain 70 243 IPR011990 GO:0005515
Bda15g00557 375 SUPERFAMILY TPR-like 106 210 IPR011990 GO:0005515
Bda15g00557 375 ProSitePatterns Thioredoxin family active site. 291 309 IPR017937 -
Bda15g00557 375 SUPERFAMILY Thioredoxin-like 224 371 IPR036249 -
Bda15g00557 375 ProSiteProfiles Thioredoxin domain profile. 264 373 IPR013766 -
Bda15g00557 375 CDD TRX_family 283 369 - -
Bda15g00557 375 ProSiteProfiles TPR repeat profile. 109 142 IPR019734 GO:0005515
Bda15g00557 375 SMART tpr_5 177 210 IPR019734 GO:0005515
Bda15g00557 375 SMART tpr_5 143 176 IPR019734 GO:0005515
Bda15g00557 375 SMART tpr_5 109 142 IPR019734 GO:0005515
Bda15g00557 375 Coils Coil 226 255 - -
Bda15g00557 375 Pfam Thioredoxin 287 369 IPR013766 -
Bda15g00557 375 Gene3D Glutaredoxin 279 374 - -
Bda15g00557 375 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TDX 1 373 - -
Bda15g00557 375 CDD Hip_N 3 43 IPR034649 GO:0046983
Bda15g00557 375 Gene3D - 1 44 - -
Bda15g00557 375 PANTHER HSC70-INTERACTING PROTEIN 1 373 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00557 K09560 ST13; suppressor of tumorigenicity protein 13 - qsu:112025252 511.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g01105 Bda15g00557 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00325 Bda-Chr1:28505057 Bda15g00557 Bda-Chr15:8687777 9.21E-13 dispersed
Bda09g00791 Bda-Chr9:14869458 Bda15g00557 Bda-Chr15:8687777 2.39E-17 dispersed
Bda09g00793 Bda-Chr9:14912462 Bda15g00557 Bda-Chr15:8687777 2.06E-17 dispersed
Bda15g00557 Bda-Chr15:8687777 Bda01g01515 Bda-Chr1:50998471 3.76E-25 dispersed
Bda15g00557 Bda-Chr15:8687777 Bda07g00307 Bda-Chr7:4168903 7.73E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g186 . . . Bda15g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0774 . . . . . . . . . . Bda14g01105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017221 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00557 Bda_Chr15 FPKM 19.701094 20.771921 30.176098 30.789978 24.008383 24.643141 24.473158 27.603584 31.998184