Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00560 ATGGAGGTGCTTGTTATTAGTTCTCAAAAGGGTCAAGCAATGTTATTCCCAAAAGGAGGGTGGGAGAACGACGAGTCTATGGAAGCTGCAGCTTCAAGAGAGACTCTGGAAGAAGCTGGTGTAATTGGGAAAATCCAAAGTAGATTGGGGAAGTGGCAATACAAGAGCAAGAGCCACAGCAAAATGCACGAAGGCTACATGTTTTCTTTGCTCGTCAAAGAGCAGTTGAACCATTGGCCTGAGAAAAACTTCAGAAAACGAGAATGGATGAGTGTAGAAAAGGCTAAAGAAGCTTGTCCTCATTCATGGATGAAAGAAGCTTTAGATGTATTAGTCAGTCAGCAAATGGAGCAAAAACAGAATGGATGTTTCTGTATATAA 381 41.73 MEVLVISSQKGQAMLFPKGGWENDESMEAAASRETLEEAGVIGKIQSRLGKWQYKSKSHSKMHEGYMFSLLVKEQLNHWPEKNFRKREWMSVEKAKEACPHSWMKEALDVLVSQQMEQKQNGCFCI 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8733944 8734578 + Bda012398.1 Bda15g00560 22255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00560 126 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 120 - -
Bda15g00560 126 PANTHER NUDIX HYDROLASE 4-LIKE 1 120 - -
Bda15g00560 126 ProSiteProfiles Nudix hydrolase domain profile. 1 112 IPR000086 -
Bda15g00560 126 SUPERFAMILY Nudix 4 114 IPR015797 -
Bda15g00560 126 CDD Nudix_Hydrolase_9 2 105 - -
Bda15g00560 126 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 1 114 - -
Bda15g00560 126 Pfam NUDIX domain 3 106 IPR000086 -
Bda15g00560 126 ProSitePatterns Nudix box signature. 19 40 IPR020084 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00560 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - gmx:100800531 184.496
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00102 Bda-Chr15:3254896 Bda15g00560 Bda-Chr15:8733944 1.34E-34 dispersed
Bda15g00560 Bda-Chr15:8733944 Bda14g00426 Bda-Chr14:3089504 1.15E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g175 . . . Bda15g00560 Bpe12g00647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00124 Blo15g00019 . . Bpe07g01087 . . Bma08g00106 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014882 1 0 2 1 2 0 2 0 0 0 0 0 2 0 0 1 0 2 2 0 0 1 0 0 0 0 0 1 0 0 17
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00560 Bda_Chr15 FPKM 23.234884 25.124203 17.740864 16.643116 12.181828 12.555305 13.004197 18.802877 18.353607