Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00578 ATGGAGGCTTCTTCTAGGTCTGAAGACGTTGTCGTCAAAGAAGAAAGTAAGAAAGACAGATCCAGTGATGGGGATGAACTTTTCGAACGAGAAGTTCTTGTCAAGATTGGAAATGGAAAAATGAGCCATGATGGTAATGATAAGAACTCACACTCAAACAATCAGGTCCCCTTCGTGACAAAAATGGAAAAATCTTCTGTGGAATTTGACTCCATGACATCTTCTTCGAGTCGAAATGATCAGGATGAAGAGCTTGAATCAGCAAGAGTAGAAATGGGAGAGGTGAGAGAAGAAAACCAACGCCTAAAAATGTGCTTAGATCAGATGATGAAGAATTACAAGATGCTACAAATGCAGTTTGATGACATTGTTGGAAAAGATGGAAAGAAAAACAAGATGCCACCGGTAGAAGAAACCGACCTAGTTGCCCTTACGCTCGGAAGATTTCCAAGCGCGGGAAAAACGATCAGTGAAAACATCATGAATTCTCACGAACTGATCAAAGAAAATGATCAACAAATCATGACACAAGAATTAGCTCTAGGGTTAGACTGCAACTTCGATGGCTCTAGATTGAGTGATCGAATAAAGGCTCATTCGCCGAAAGGTCGAACCCCGAGTTCGAAAAGCAACGAAGAAGGAGAAGGGGAAGATCCACGGCCACCCAACAAAGGTTTGAAGACAATGAGAAGTGGAGAAGATGAAGTGATGCAGCAGAATCCACCGAAGAAAGCTAGGGTTTGTGTGAGGGCTCGTTGTGATACGCCAACGATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAGATAGCAAAAGGAAACCCATGCCCAAGAGCTTATTATCGTTGTACTGGAGCTCAATCATGTCCAGTCAGAAAACAGGTGCAAAGATGTGCAGAGGACATGTCGATTTTAATCACTACATACGAAGGAACCCACAACCACCCTCTCTCCGTCTCTGCCACAGCCATGGCATCCACCACTTCCGCAGCGGCGGCAATGCTATTATCCGGCTCATCAACCTCACAATTCAGTCCTAACCCATCAGCAACAACAGCCACCACCACTCAGGCAAATCTCCACGGATTAAACTTCTATCTTTCTGACAATTCAAATTCAAAACAATTTTATTTACCCAATTCTTCCATGTCATCTTCCTCGCCCACACACCCAACAATCACCATAGACCTCACTTCAAATCCGTCTTCTTCTTCTTCGTCTTATGCTTCTTCTTCTTCCCATTTTGGCAGACCTTTTTCTTCATCGTATCCTCCTAGGTATCCTTTCACAAACCTGGATTTCGGTTCTTCTCAGTCCAACCTTATGTCTTGGGGCAATGGCCTTCTTGGCTATGGAAATCAACTGCCTTATAACACAACCCAAATGGGAACTTCTGATATCGGAACTTATATGCAGAAGACAAATAACGTGCCAGTTGTAGCGGCGCCCCCACGACACCCTCTTCCGGACCCAATCGCCGCCGCAACGAAGGTAATTACAGCGGACCCTAGTTTCCAATCTGCTTTAGCGGCGGCATTAACATCATTCATCGGAAATGGAGCTAGCGGCAGTGTCGCCGGTGAAAATTTTCTGGAAAATTTGAAGTGGGTGGAGAAGTTTCCACTGGCGTCGTCTACCCAAAAAGGAAATGGGTGCGGATCGAGCTTCATCAGCACCACGCCGGCGACGAATTCTCAGCATGGGAACTTGACGTTCTTACCTTCAAATTCATCGCCATTTTCGACATCCAAAAGTGCTTCTACATCTCTGGGAGATAACAGAGATCACCAACCTAGTTGA 1803 44.98 MEASSRSEDVVVKEESKKDRSSDGDELFEREVLVKIGNGKMSHDGNDKNSHSNNQVPFVTKMEKSSVEFDSMTSSSSRNDQDEELESARVEMGEVREENQRLKMCLDQMMKNYKMLQMQFDDIVGKDGKKNKMPPVEETDLVALTLGRFPSAGKTISENIMNSHELIKENDQQIMTQELALGLDCNFDGSRLSDRIKAHSPKGRTPSSKSNEEGEGEDPRPPNKGLKTMRSGEDEVMQQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAQSCPVRKQVQRCAEDMSILITTYEGTHNHPLSVSATAMASTTSAAAAMLLSGSSTSQFSPNPSATTATTTQANLHGLNFYLSDNSNSKQFYLPNSSMSSSSPTHPTITIDLTSNPSSSSSSYASSSSHFGRPFSSSYPPRYPFTNLDFGSSQSNLMSWGNGLLGYGNQLPYNTTQMGTSDIGTYMQKTNNVPVVAAPPRHPLPDPIAAATKVITADPSFQSALAAALTSFIGNGASGSVAGENFLENLKWVEKFPLASSTQKGNGCGSSFISTTPATNSQHGNLTFLPSNSSPFSTSKSASTSLGDNRDHQPS 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9002564 9005686 + Bda012421.1 Bda15g00578 22273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00578 600 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00578 600 MobiDBLite consensus disorder prediction 380 402 - -
Bda15g00578 600 MobiDBLite consensus disorder prediction 48 76 - -
Bda15g00578 600 MobiDBLite consensus disorder prediction 1 47 - -
Bda15g00578 600 Pfam WRKY DNA -binding domain 259 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00578 600 MobiDBLite consensus disorder prediction 1 88 - -
Bda15g00578 600 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 53 595 IPR044810 GO:0003700
Bda15g00578 600 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda15g00578 600 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 53 595 - -
Bda15g00578 600 SUPERFAMILY WRKY DNA-binding domain 251 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda15g00578 600 Coils Coil 78 98 - -
Bda15g00578 600 MobiDBLite consensus disorder prediction 194 231 - -
Bda15g00578 600 MobiDBLite consensus disorder prediction 568 600 - -
Bda15g00578 600 Gene3D WRKY domain 243 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda15g00578 600 MobiDBLite consensus disorder prediction 194 243 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda14g00841 Bda15g00578 CCT
Bda11g01690 Bda15g00578 CCT
Bda14g00841 Bda15g00578 ECH
Bda11g01690 Bda15g00578 ECH
Bda06g00552 Bda15g00578 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01690 Bda-Chr11:51041601 Bda15g00578 Bda-Chr15:9002564 1.52E-87 dispersed
Bda14g00841 Bda-Chr14:6479186 Bda15g00578 Bda-Chr15:9002564 6.67E-91 dispersed
Bda15g00578 Bda-Chr15:9002564 Bda15g00959 Bda-Chr15:17679033 1.88E-56 dispersed
Bda15g00578 Bda-Chr15:9002564 Bda15g00595 Bda-Chr15:9149910 0 wgd
Bda15g00578 Bda-Chr15:9002564 Bda06g00552 Bda-Chr6:7798195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17182 PF03106 WRKY 1.10E-23 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00578 - - tcc:18604620 543.117