Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00581 ATGCCTGGAAGTATTATTGAGATTGAGCTTTACAACTTTATGACCTTCAATCACTTAAAATGCAAACCGGGATCACGATTGAACCTTGTTATTGGTCCAAATGGATCTGGAAAAAGCTCAATCGTTTGTGCCATTGCACTTGGTCTTGGTGGCGAGCCTCAGCTTCTTGGGAGAGCCACAAATATTGGTGCATTTGTGAAACGTGGAGAGGAGTCTGGCTATATAAAAATTACCTTGAGAGGCGAGACTAAAGAAGAGCAGATTTCCATCATGCGGAGAATGGACTTTTTGCCACAGGACAAGGTTTGTGAGTTTGCAAAACTAACTCCTGTGCAACTTCTAGAAGAGACTGAAAAAGCTATTGGCGATACTCAACTTCCAGGCCAACATCGTGCGCTTGTTGAAAAAAGCCGTGAAATAAAGAATATAGAGCGGGCTGTGGAAAAAAATGGAGACACATTGAATCAGTTGAAGGCACTAAATGCTGAGCTAGAGAAGGATGTTGAGCGTGTTCGTCAAAGGGAAATACTTCTAGCAAAGGCTGAGTCCATGAAAAAGAAATTGCCGTGGCTTAAGTATGATATAAAGAAGGTTGAATATATAGAATTGAAGGAGAAGGAGAATGATGCCAAAAAGAAGTTGGATGAAGCAGCAACGACATTAAATGGTCTCAAGGAACCCATTGAGAAACATAAAAAGGAGAAAGCAGTGGTGGATGGTAAAAGCAAAAAAATTAGCAATATCATGAATAATAATACGAAGAAACGAATCGAGCTTCTAGATAATGAAAACCATTTGGGGGTAGAAGTACAAGGCAAGTACAAAGAAATGGGAGATTTGAGGAAGCAAGAAGAGTCTCGGCAACAAAGAATTATACAAGCTAAGGAGGAACTTGTTGCAGCTGAACTAGAGCTTCAAAATTTGCGTCCCTATTGTGTTCCACGGGAGGATATTGAAAGATTAGCTAGTCAAATAATGGATCTTGAACTTTCTGCAAATCAAAAGAGGTTGTCTAAGACAGAGAGCGAAAAAGTCTTAGCTCAAAAAAGGATAGCCTTGAGACAGTGCTTAGACAGGTTAAAGGATATGGAAAGCAAACATACTAAACTTTTGCAGGCATTGGAAAATTCTGGAGCTGATAAGATTTCTGATGCTTTCCGCTGGTTGCGAGAACATCGCCATGATTTCAACAAGGAGGTTTATGGTCCAATTTTGCTTGAGGTTAATGTTTCTAATCAGATTCATGCTGACTACTTGGAAAGTCAAACCCCTTATTACATCTGGAAGTCATTGGTCAGTAATCTCCGCCTACAACTAATATTTAACCTTTTATTTCTTTTGATTTTTGACTTGCAGTCTTTTGTAACTCAAGATTCTAATGATCGTGACCTTTTGGTAAAATGTTTCAAATCATTTGATGTTCCCATTTTGAATTACGTGGATGATGAGGGTCGTCGAAAAGAAAAATTTGAAATTACTGAGGAGATGCGAAAACTTGGCATCTATTCTAGGCTTGACCAAGTTTTTGATGCTCCCAACTCTGTGAAGGAAGTTTTGATCAGTCAGTTTGCTTTGGATCGCTCATATATTGGTTCTAAGGAGACTGATCAGAAGGCAGATGCAGTTTCAAAATATGGAATTTTAGATTTTTGGACTCCAGAAAATCACTATCACTGGTCTGTATCCAGATACGGTGACCATATGACTGGAAATGTGGAACCAGTGGAGCGGTCCCGTCTTCTTCTGTGCAATAAGGATGTGGGTGAAATTGATGGTCTGAGATCGAGGAAAAGTGAACTGGAAGAATCTGTAGCAGCTTTAGAAGAAAGCCACAAGTCCTTTCAGATTGAGATAAGAAACATAGAAAATGAAACAGCTAAACTTCGTAAACAAAGGGAGGACATTATCAGCATTGTGCACCAGGAGAAGAGGAAGCGTCAGGAAATGGAAAATCGTATCAATCAAAGGAAAAAGAAACTAGAATCCATGTCACAAGAGGAAGACTTGGAGACTTTCATAGCGAAGCTTAATGATCAAGCTGCAGGTATATCTATTCAACGGTTCCGCTGTGCAATAGAGATTAAGAATCTACTTGTAGATACTATATCCCACCGACGAAGTTTTGCTCAACATCATTTGTCATCAATTGAATTTGATGCTAAGATTAGAGACATGGAATTCAATATGAAGAAACAGGAGAAGGATGCTATGCAAGCATCATTGCACTTAGAGAATTGTAAGAAGGAAGTAGAGGATTGTAGACAGCAACTGTCAGTTGCTAAGAGGCATGCGGAATCAATTGCTGTGATCACTCCTGAACTTAAAAAGGATTTTCTTGAGGTTTGTTAG 2349 39.29 MPGSIIEIELYNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATNIGAFVKRGEESGYIKITLRGETKEEQISIMRRMDFLPQDKVCEFAKLTPVQLLEETEKAIGDTQLPGQHRALVEKSREIKNIERAVEKNGDTLNQLKALNAELEKDVERVRQREILLAKAESMKKKLPWLKYDIKKVEYIELKEKENDAKKKLDEAATTLNGLKEPIEKHKKEKAVVDGKSKKISNIMNNNTKKRIELLDNENHLGVEVQGKYKEMGDLRKQEESRQQRIIQAKEELVAAELELQNLRPYCVPREDIERLASQIMDLELSANQKRLSKTESEKVLAQKRIALRQCLDRLKDMESKHTKLLQALENSGADKISDAFRWLREHRHDFNKEVYGPILLEVNVSNQIHADYLESQTPYYIWKSLVSNLRLQLIFNLLFLLIFDLQSFVTQDSNDRDLLVKCFKSFDVPILNYVDDEGRRKEKFEITEEMRKLGIYSRLDQVFDAPNSVKEVLISQFALDRSYIGSKETDQKADAVSKYGILDFWTPENHYHWSVSRYGDHMTGNVEPVERSRLLLCNKDVGEIDGLRSRKSELEESVAALEESHKSFQIEIRNIENETAKLRKQREDIISIVHQEKRKRQEMENRINQRKKKLESMSQEEDLETFIAKLNDQAAGISIQRFRCAIEIKNLLVDTISHRRSFAQHHLSSIEFDAKIRDMEFNMKKQEKDAMQASLHLENCKKEVEDCRQQLSVAKRHAESIAVITPELKKDFLEVC 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9023381 9036115 - Bda012424.1 Bda15g00581 22276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00581 782 Coils Coil 590 631 - -
Bda15g00581 782 Coils Coil 200 220 - -
Bda15g00581 782 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 450 780 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bda15g00581 782 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 95 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bda15g00581 782 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 95 432 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Bda15g00581 782 Coils Coil 729 763 - -
Bda15g00581 782 Coils Coil 639 666 - -
Bda15g00581 782 Pfam AAA domain 8 282 IPR038729 GO:0140664
Bda15g00581 782 Gene3D - 4 250 IPR027417 -
Bda15g00581 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 255 IPR027417 -
Bda15g00581 782 Coils Coil 346 377 - -
Bda15g00581 782 Coils Coil 143 174 - -
Bda15g00581 782 CDD ABC_SMC5_euk 3 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00581 K22803 SMC5; structural maintenance of chromosomes protein 5 - vvi:100249983 1046.19
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00581 . 1 781 Structural Maintenance of Chromosomes family AT5G15920 56.3 5.4e-249 857.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00581 Bda_Chr15 FPKM 11.16013 12.873785 15.439779 15.952273 17.829935 19.482098 14.052235 10.560905 10.393076