Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00587 ATGGGGCATAAGAAGAAAAATGCTGCTCCTCGTTCAAAACAATCTGAGGCGGCTTCACCGGCGGTTGAAGCTGCTGTTGGCGGAGCCGCCGCTGATGCTGTGAGTATATTAAATTCTGACCCTTGCTTGCAACCTCATGACCCCAATAATCTGAACCTTCATAATCACAACCAAGGCGAGGATGAGCCTGGGGCCGGGATTGAGTCGGACAGTTCATCTTTCTCCATTGTTAAGCTCGAATGTGAACGTGGGCTCACTGCCTTACGGAGGGGGAACCACAAGAGGGCTCTAAAGATGATGAAAGAGGCATGTTTAAGGCATGAGAATTCAGCTTTGATTCACCGGGTTCAAGGAACGGTTTGTATCAAAGTTGCGTCGATGATTGATGATTTACACACAAAGCAGCGGCATTTAAAGAATGCAATTGAGTCAGCTCATAAAGCCGTTGAACTCTCACCAAACTCCATTGAATTTGCGCACTTCTATGCAAATTTGCTGTATGAGGCAGCAAATGATGGGAAGGAGTATGAAGAAGTCGTGCAACAGTGTGAACGGGCACTTGGAATTGAAACCCCAATTGATCCTGCAAAAGAAAGCTTGCAGGATGAGAGCCAGCAGAAGATATCAACTGCAGAAGCTCGAATTTCTCATGTGCAAAATGAGTTGCGGCAGCTTATTCAGAAGTCAAATCTTGCTTCTCTATCAACCTGGATGAAGAACTTCGGGAATGGGGAAGAGAAATTTCGGTTGATTCCAATCAGAAGGGTGGCAGAAGACCCCATGGAGGTTACGTTGGTTCAGGCTAAGAGGCCAAATGAGATTAAGAAAGCAAATAAAACCCCCGAGGAACGTAGGAAGGAGATTGAAGTTCGTGTTGCTGCTGCAAGACTTTTGCAGCAGAAATCTGAGGCATCCCATGTGCAAAACGAGGGAGATAAGTGTGATATACAATCAGGGTCTGGCCAGAGATCAGGTGAGCCGAGGAAGCATGGGAATTTAAGGAAACAGGGATCTTCAGCTGAAAGGAAGGATAGGGTTCAGTTGTATTGGAAGTCTTTGAATATTGACTCCAAGAAAGACTTTCTTAGGGTAAGGATAAATGATCTTAGAGGCCATTTTAATTCTTCTAAGGATGGTTCTGCCGCTGAAGTACTCTCAGAAGCTTTATCTTTTTTTGAGGCCAATAAAACGTGTAAGTTCTGGCTGTGCTGCCAATGTATTGAGAAATTTGCTGACTCTGATTCTCATATGCAACATATAGTGCAGGAGCACATGCCTAATCTCTTACCAAAGATGCAGAAAGTCGTCACAAAGATCAGGGCATCTATAACACATTCTCTGCCGGACAACTGGCCAATCTCCGATGATTCAGATCGTTCAAAGCTTCTTGAAAAAATTCATGTCATGTTTGAGTTGCTTATCAGTCATAAATATCTTGCTGAAAGCCATCTGAAAGAGGTTATTCAATATACAATGGACGAGCTTCAGGGTCTTCCCTCTGGTTCTTATCTTCTAAACCATGGTTTGGACCAAACACCAATTTGCATATGCTTTTTGGGAGCTTCACAGCTTAATAAAATTCTCAAATACTTTCAAGAATTGTCTCATTCTTGCGGTTTAAGTATATATTCCGAGAAGAGTAACAATCACATAAATGATGTCAACAGCGGCACACAAGTTATTGCGAATAAAGTCAATATTGCTTTGAATGGCGATGGGTCATATCTCCTTCTCGATGGTTGCTTAATGTCAGATGACAGTCTTGCCGGTAATGTCAGCAATAGTTGCGCAGATAATGTTGTTAGTGCAACTCCTGTGAAGACTGCAAATGCAAACTGGATTCTTCCTGATGTGGATGCCCTGTTGTCCTACATTTTGGTTGGCCCTTCAAGTGAGGATAAGCTGGCATCGTGGCTACGTGCTAAAGAAGAAAAAATTCAAAAAGGAATAGAAATTCTCCATATGCTGGAGAAGGAATTTTACCACCTACAGAGCCTTTGTGAGAGAAAATGTGAACATTTAAGCTATGAAGGCGCATTACAAGCTGTGGAGGATCTTTGTCTTGAAGAAGGTAAAAAGAGTGAGAATATGACTGATTCTGGGCATCAAAGCTACGAATCTGTTCTCAGAAAGCGAAGAGAAGAGCTTATTCAAGCAGAAAATGATGGGATGTTACTCAGTAGTAAATTTGATTTGGATGCTTTAAACGATGTTTTGAAAGAAGCAGAAGCTCTTAGTGCCAATCAATTCGGATGCGATGAAACTTATGCAGGGATGTCTTCTCAGTTGTGTGACCTGGAATCTGGGGAAGATGAATATTGGAGAACTAAAGACTATTTGCGTGAAGCTGATACATGTATTGAAGTTGCAATTCAAAGGCAAAAGGAACAGTTATCTATAGAGATTAGCAAAATTGATGCACTAATCATGAGAAATGTAACTGGAATGCAGCATTTGGAACTCAAGCTTGAGCCTGTTTGTGCTCATGATTATCAGTCAATACTATTGTCTCTTGTGCAATCGTACTTGAGGGTGCAATTGGAGGATCTGGCCGAGAAAGATGCAACAGAAAAATCTGATGCTGCAAGAGAAGCATTTTTAGCTGAGCTTGAGCTAGATTCAAAGAGAGGCATCAGACGAAGCAATGATAATTTGAGACACTTCCAGGAAAAGACAAAAGACAAAAAAAAGCACAAGGAATCTAGAAAAATCAAAGATTCCAAGGTTCAAATTTTGCATTCTTTTTCCCTTCAATCTGATGATGGCAAAGTTCTAGATTCAGATGCTGCCATGTCAGAAGATGCTGATGAGTTGAAACTTCAAGAAGAGGAATTTAGCCAGAAAATTGAGCTTGAAGCTGAAGAAAGAAAGCTTGAAGAGACTTTAGAATATCAAAGACGAATTGAGGAGGAAGCCAAGCAAAAGCATCTTGCGGAGCAACACAAGAAATCTGCTCAGACATATCCGGAAGAAAAGATCACAGTGAGTATTTGGTACTGTGCCTCTGTTTCACTTAAGAGGATAATTAGAGGAGTTATTTTTTGTTTTTTTCCTTTTGCAGAATTGTCTAATGGTAAAATTTTCGAGAATTGTCTCCCACCTTATGATCGACGGACTGGAAGGAAAGGTAGACGATCAAAGGGTTCTGCTAAATTGGTCAATGGAAGGTATCAAACCATAGCATTTGACCAGGATATTTGTGATTTAGAAGCTAGGAGTTCACAGCTTGATAATCCAGTAAAAGGGCAAGATAAATTTCATGACAATCCCCTGGCAGATAGAGTTCCTTCTGCTTTGGAAGATAATGGTACAACCCCATTAAGTCATTTACAAGTGGAGGAGGAGGAGGAGGAACTGTTCAAAGCTGATCTTAAAATGGCTTTATGTTACTTCTCAGATGCATCCAAGGCACACAAGAAGTTGCCAACGGTTTCAGGAGTGAGAAAACCACCTATCACTTCTGCTGTAGTGGATCACATTGGCGTTTCATCAAATGATTCCTTGTGGCATTTAAGACCGTTTCGAGATGAGTTCCTGAGGAGGTCTACCATTGAGCATGTTCATGTGGGGGATCCTTGTGTTGTCTGTGCGTTATATGAAATCTTCACCTCCCTGAGCATTGCATCCACCGCAGGTCAACAAGAACCGGTGGCCCCCTCTTCTCTGAGAATGGCTCTTAGCAACCTCTACCCTGATAGTAATTTCTTTCAGGAGGGTCAGATGAATGATGCTTCTGAAGTCCTAGAAGTGATATTTACCTGCCTTCACCAAGCATTTACGTCTACTAGTTTACGGGCTTCTGATGCTGAATTAGTTGATGGCAACAGCATAGGGTCTTGGCATTGTGGAAATGATGTTTGTATAGTGCATTCCATTTTTGGTCTGGACATTTTTGAACGAATGAACTGTTGCAGTTGTGGACTTGAGTCCAGATATTTAAAGTATACTTCCTTCTTCCACAATATAAATGCAAGTGCCCTCCGAGCTACAAAGGTTATGTGTGAAGAGAGCGTTTGCTACTATGGCCAACACTATCACTGCTTCGCATATTGTCATGAGTATGAATGCTGGATTATGTATGATGATAAAACTGTTAAGGTAATTGGTAGCTGGGCTGAAGTTCTTAGCATGTGTGAGAAGGGGCATTTGCAACCTCAGGTTCTTTTCTTCGAAGCTGTAAACTAG 4185 41.72 MGHKKKNAAPRSKQSEAASPAVEAAVGGAAADAVSILNSDPCLQPHDPNNLNLHNHNQGEDEPGAGIESDSSSFSIVKLECERGLTALRRGNHKRALKMMKEACLRHENSALIHRVQGTVCIKVASMIDDLHTKQRHLKNAIESAHKAVELSPNSIEFAHFYANLLYEAANDGKEYEEVVQQCERALGIETPIDPAKESLQDESQQKISTAEARISHVQNELRQLIQKSNLASLSTWMKNFGNGEEKFRLIPIRRVAEDPMEVTLVQAKRPNEIKKANKTPEERRKEIEVRVAAARLLQQKSEASHVQNEGDKCDIQSGSGQRSGEPRKHGNLRKQGSSAERKDRVQLYWKSLNIDSKKDFLRVRINDLRGHFNSSKDGSAAEVLSEALSFFEANKTCKFWLCCQCIEKFADSDSHMQHIVQEHMPNLLPKMQKVVTKIRASITHSLPDNWPISDDSDRSKLLEKIHVMFELLISHKYLAESHLKEVIQYTMDELQGLPSGSYLLNHGLDQTPICICFLGASQLNKILKYFQELSHSCGLSIYSEKSNNHINDVNSGTQVIANKVNIALNGDGSYLLLDGCLMSDDSLAGNVSNSCADNVVSATPVKTANANWILPDVDALLSYILVGPSSEDKLASWLRAKEEKIQKGIEILHMLEKEFYHLQSLCERKCEHLSYEGALQAVEDLCLEEGKKSENMTDSGHQSYESVLRKRREELIQAENDGMLLSSKFDLDALNDVLKEAEALSANQFGCDETYAGMSSQLCDLESGEDEYWRTKDYLREADTCIEVAIQRQKEQLSIEISKIDALIMRNVTGMQHLELKLEPVCAHDYQSILLSLVQSYLRVQLEDLAEKDATEKSDAAREAFLAELELDSKRGIRRSNDNLRHFQEKTKDKKKHKESRKIKDSKVQILHSFSLQSDDGKVLDSDAAMSEDADELKLQEEEFSQKIELEAEERKLEETLEYQRRIEEEAKQKHLAEQHKKSAQTYPEEKITVSIWYCASVSLKRIIRGVIFCFFPFAELSNGKIFENCLPPYDRRTGRKGRRSKGSAKLVNGRYQTIAFDQDICDLEARSSQLDNPVKGQDKFHDNPLADRVPSALEDNGTTPLSHLQVEEEEEELFKADLKMALCYFSDASKAHKKLPTVSGVRKPPITSAVVDHIGVSSNDSLWHLRPFRDEFLRRSTIEHVHVGDPCVVCALYEIFTSLSIASTAGQQEPVAPSSLRMALSNLYPDSNFFQEGQMNDASEVLEVIFTCLHQAFTSTSLRASDAELVDGNSIGSWHCGNDVCIVHSIFGLDIFERMNCCSCGLESRYLKYTSFFHNINASALRATKVMCEESVCYYGQHYHCFAYCHEYECWIMYDDKTVKVIGSWAEVLSMCEKGHLQPQVLFFEAVN 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9072127 9080424 - Bda012430.2 Bda15g00587 22282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00587 1394 MobiDBLite consensus disorder prediction 42 57 - -
Bda15g00587 1394 Gene3D Cysteine proteinases 1163 1323 - -
Bda15g00587 1394 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1166 1337 - -
Bda15g00587 1394 Coils Coil 201 228 - -
Bda15g00587 1394 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1338 1394 - -
Bda15g00587 1394 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1166 1337 - -
Bda15g00587 1394 MobiDBLite consensus disorder prediction 39 70 - -
Bda15g00587 1394 SUPERFAMILY TPR-like 83 187 IPR011990 GO:0005515
Bda15g00587 1394 SUPERFAMILY Cysteine proteinases 1167 1391 IPR038765 -
Bda15g00587 1394 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 437 - -
Bda15g00587 1394 Pfam Ubiquitin carboxyl-terminal hydrolase 1167 1307 IPR001394 GO:0004843|GO:0016579
Bda15g00587 1394 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 437 - -
Bda15g00587 1394 MobiDBLite consensus disorder prediction 1 24 - -
Bda15g00587 1394 MobiDBLite consensus disorder prediction 881 906 - -
Bda15g00587 1394 Pfam Protein of unknown function (DUF629) 447 789 IPR006865 -
Bda15g00587 1394 Pfam Protein of unknown function (DUF629) 345 438 IPR006865 -
Bda15g00587 1394 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 445 991 - -
Bda15g00587 1394 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1023 1145 - -
Bda15g00587 1394 Coils Coil 639 659 - -
Bda15g00587 1394 Coils Coil 935 971 - -
Bda15g00587 1394 Coils Coil 702 722 - -
Bda15g00587 1394 Gene3D Tetratricopeptide repeat domain 66 232 IPR011990 GO:0005515
Bda15g00587 1394 MobiDBLite consensus disorder prediction 301 340 - -
Bda15g00587 1394 Pfam Protein of unknown function (DUF627) 86 190 IPR006866 -
Bda15g00587 1394 MobiDBLite consensus disorder prediction 301 325 - -
Bda15g00587 1394 PANTHER UBIQUITIN SPECIFIC PROTEINASE 445 991 - -
Bda15g00587 1394 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1338 1394 - -
Bda15g00587 1394 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1023 1145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00587 - - - lsv:111916809 1236.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01247 Bda-Chr1:47881957 Bda15g00587 Bda-Chr15:9072127 1.05E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g486 . . . Bda15g00587 Bpe12g00561 . . Bma12g01008 . . Cma10g00173 Cma11g00167 Car10g00162 Car11g00132 . . Cpe04g01519 Bhi02g00359 . . . Hepe09g0144 . . Cla06g01614 Cam06g1793 Cec06g1842 Cco06g1848 Clacu06g1752 Cmu06g1696 Cre06g2513 . . Cone13ag0094 Cone19ag0097 . . . . . Blo15g00296 . . Bpe07g00798 . . Bma08g00201 . Cmo10g00186 Cmo11g00142 . . . . . Cpe18g00809 . . . . . . . . . . . . . . Lsi06g01495 Csa01g00207 Chy02g02525 Cme02g01911
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004255 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 2 1 1 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00587 Bda_Chr15 FPKM 1.725675 2.980662 2.044521 1.795774 0.511989 0.56812 0.256045 5.434923 3.996796