Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00614 ATGAATTTGCCGAAGTTTTCCGAGAAAGACGTGAGGGCATTTCGTTTTAGGATGGAGACTGAAGAAATTAATAATCCATGGCGTCTATCGTCACTCATGTTCTTATTTATCTTGATTATAGGACATGTCGTCGACGGTGATCTTCTGGATACAGACAGAGAGGTTCTTTTAGACCTAAAATCCTCACTGGAAAGTCAGAATCCGGTAAATCAAGGGAGATACTCAACCTGGAATTTAGAGAACTCAAATCCATGTAGCTGGCAAGGTATAATCTGCAATTTCAATAACTCCAGGGTCACCGGAATCGATCTCTCCGACGAACTCATTTCCGGACTGTTATACGGAAACTTCTCCCTTTTAACTGAGCTCTCCTACCTCGATTTATCTGAAAACACACTGCAAGGGTCAATTCCAGATGATTTGAATAGTTGCAGAAGCCTCAGATACCTCAACCTCTCGCATAACATTCTGCAAGGTGACCTTAACTTGTCTAATTTGATCAACTTAGAGACTCTAGATCTATCTGTGAATCGAATTCTGGGCGATCTTGAGTCCAATTTTCCTGCTGTGTGCGAAAAATTAGTAGTTGCTAATTTATCTTCGAACAATTTCACTGGTCGGATTGACAAGTGTTTTGAGGCTTGTTGGAATTTGAAGTACTTGGATTTGAGCTCCAATCACTTAACTGGGGATTTATGGGTTGGGATGGAGAAACTCTGGGAAATCTCCTTCTCCAAAAACAATCTAACCGGCGAAGTTTCACCGCTGCTTTTCACAGAGAATTGCAGCTTGAACGTGATAGACCTTTCAGAGAATAATTTCAGAGGTGAATTTCCAGGAGAGATATCGAATTGCCAGAATTTGACTAGTCTGATTCTTTGGGGGAACAATTTCACCGGCAAAATTCCAACCGAGATAGGACGGATTTCAAGCATAGAAGCTTTATATTTGGGTAACAACAATTTTTCGAGGGAAATTCCTGAGTCTCTTTTGGGCTTGTCCAAATTAGTCTTCTTGGATTTGAGCAGAAACAACTTTGGTGGAGAAATTCAAGACATTTTTGGGAAATTCAGGCAGGTAAAATTTCTTCTTCTACATGGAAATTCATATACTGGAGGGATATATAAATCTGGAATTCTCAACCTGCCTAACATTTCCCGCTTAGATCTTAGTTACAACGAATTTTCAGGTCCATTGCCGGTGGAAATCTCCCAAATGAAGAGTTTGAAAATCTTGATCCTCGCCCACAATCAGTTCGCCGGAAACATTCCACCGGAAATTGGAAACTTGCAGAACCTACAAGCTCTTGATCTCTCATTCAACACGATAAATGGCTCAATTCCAAGCAACCTTGGAAACATGAAGTCCCTGTTGTGGTTAATGCTCGCAAACAACTCGTTAACCGGTCCAATTCCGAGTGAATTGGGGAATTGCTCTAGCCTGCTATGGCTTAATCTGGCCAACAATCAGCTCTCCGGAGAAATTCCATCAGAACTAACAAATATAGGATTAAATGCAACGGTAACATTTGAAGAAAATCGTAGAAATGAAAATTTCACAGCTGGTTCAGGTGAGTGCCTGGCAATGAAGAGATGGATTCCTGCAAATTACCCTCCTTTTAGTTTTGTCTACACACTCCTTACCAGGAAAAGTTGTCGAAACACCTGGGATCGACTGCTTAAAGGGTATGGTCTTTTTCCGATGTGTAGTTCAGGATCGTCGATGAGAACTCTCCAAATCTCGGGTTATGTTCAACTAACTGGAAATCAGATATCTGGGGAGGTACCTTCAGGTATTGGCAAGATGCAGAATTTCAGTTTGTTGCACTTAGGATGCAACGAATTCTCAGGTAGACTCCCACCACAGATAGGCGAATTGCCGCTCGTAGTCCTGAATGTCTCCTACAACAAGTTTTCAGGCGAAATTCCTTCCGAAATTGGAAACATTAGATGCTTGCAGAATCTAGATTTGTCCTACAACAACTTTTCAGGCACATTTCCTAAGAGTTTGAGCAAATTAAATGAACTGAGCAAGTTCAACATCTCATATAACCCTCTGATTTCTGGAGAAATACCTGCAACTGGGCAATTTGCAACTTTTGAAAAAGAATCCTTTCTTGGAGATCCCCTTCTGTGCCTTCCAAACTTCTTCAACACCACCCCTCCTAGAAAACCTAACGAAGATTTTGCGAAATTGTCAAAAGATTCTTCAAGAATGACTAAAATATGGGCTCTCTCGTCTTTGGCGCTGGTTGTCATGATAGGTGCGCTAATTACAGTTACAGTGTGTTTGCTAGTGAAATCTCCATCAGAAAATCGAAAATCTCATGAATCGAAATACGGCAAGCATCCAAAGGAATTTGCAGCGAGCTCTCAGTATTCTTCACCATGGTTATCAGATACCGTTAAGGTGATCCAGCTTGACAAAACAACTTTTACACATTCCGACATTCTAAAAGCCACCGACAACTTCTCCGAAAAAAAGGTCATCGGAAAAGGAGGTTTCGGGACCGTCTACAGAGGGGTTTTACGGGATGGGAGACGGGTAGCTGTCAAGAAGCTTCAGAGAGAAGGAACAGAAGGTGAAAGAGAGTTCCAAGCTGAAATGAAAGTCCTTACCGGAAATGGGTTCGGCTGGCCGCACCCGAATCTAGTTACACTTTATGGATGGTGTCTAGATGGATCGGAAAAGATATTGGTATACGAATTTATGGAGGGTGGCAGTTTAGAAGATCTTATTTCAGATCGACGGAGACTAACATGGCGAAAACGCCTTGATATAGCAATCGATGTAGGCGCGGGCATTGCTGTTTCTTCACCACGAATGCTTCCCTCCGATTGTCCACCGTGA 2850 42.0 MNLPKFSEKDVRAFRFRMETEEINNPWRLSSLMFLFILIIGHVVDGDLLDTDREVLLDLKSSLESQNPVNQGRYSTWNLENSNPCSWQGIICNFNNSRVTGIDLSDELISGLLYGNFSLLTELSYLDLSENTLQGSIPDDLNSCRSLRYLNLSHNILQGDLNLSNLINLETLDLSVNRILGDLESNFPAVCEKLVVANLSSNNFTGRIDKCFEACWNLKYLDLSSNHLTGDLWVGMEKLWEISFSKNNLTGEVSPLLFTENCSLNVIDLSENNFRGEFPGEISNCQNLTSLILWGNNFTGKIPTEIGRISSIEALYLGNNNFSREIPESLLGLSKLVFLDLSRNNFGGEIQDIFGKFRQVKFLLLHGNSYTGGIYKSGILNLPNISRLDLSYNEFSGPLPVEISQMKSLKILILAHNQFAGNIPPEIGNLQNLQALDLSFNTINGSIPSNLGNMKSLLWLMLANNSLTGPIPSELGNCSSLLWLNLANNQLSGEIPSELTNIGLNATVTFEENRRNENFTAGSGECLAMKRWIPANYPPFSFVYTLLTRKSCRNTWDRLLKGYGLFPMCSSGSSMRTLQISGYVQLTGNQISGEVPSGIGKMQNFSLLHLGCNEFSGRLPPQIGELPLVVLNVSYNKFSGEIPSEIGNIRCLQNLDLSYNNFSGTFPKSLSKLNELSKFNISYNPLISGEIPATGQFATFEKESFLGDPLLCLPNFFNTTPPRKPNEDFAKLSKDSSRMTKIWALSSLALVVMIGALITVTVCLLVKSPSENRKSHESKYGKHPKEFAASSQYSSPWLSDTVKVIQLDKTTFTHSDILKATDNFSEKKVIGKGGFGTVYRGVLRDGRRVAVKKLQREGTEGEREFQAEMKVLTGNGFGWPHPNLVTLYGWCLDGSEKILVYEFMEGGSLEDLISDRRRLTWRKRLDIAIDVGAGIAVSSPRMLPSDCPP 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9322600 9325663 + Bda012457.1 Bda15g00614 22309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00614 949 Pfam Protein tyrosine and serine/threonine kinase 827 935 IPR001245 GO:0004672|GO:0006468
Bda15g00614 949 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 935 - -
Bda15g00614 949 Gene3D Phosphorylase Kinase; domain 1 788 903 - -
Bda15g00614 949 Gene3D Ribonuclease Inhibitor 559 727 IPR032675 -
Bda15g00614 949 Gene3D Ribonuclease Inhibitor 48 189 IPR032675 -
Bda15g00614 949 Pfam Leucine rich repeat N-terminal domain 50 93 IPR013210 -
Bda15g00614 949 Gene3D Ribonuclease Inhibitor 376 531 IPR032675 -
Bda15g00614 949 SUPERFAMILY L domain-like 237 498 - -
Bda15g00614 949 SUPERFAMILY L domain-like 539 710 - -
Bda15g00614 949 Pfam Leucine Rich repeat 217 230 IPR001611 GO:0005515
Bda15g00614 949 Pfam Leucine rich repeat 99 155 IPR001611 GO:0005515
Bda15g00614 949 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Bda15g00614 949 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Bda15g00614 949 SUPERFAMILY Protein kinase-like (PK-like) 807 936 IPR011009 -
Bda15g00614 949 ProSiteProfiles Leucine-rich repeat profile. 146 167 IPR001611 GO:0005515
Bda15g00614 949 Gene3D Ribonuclease Inhibitor 190 375 IPR032675 -
Bda15g00614 949 PRINTS Leucine-rich repeat signature 430 443 - -
Bda15g00614 949 PRINTS Leucine-rich repeat signature 123 136 - -
Bda15g00614 949 SUPERFAMILY RNI-like 82 303 - -
Bda15g00614 949 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 31 935 - -
Bda15g00614 949 ProSitePatterns Protein kinases ATP-binding region signature. 830 853 IPR017441 GO:0005524
Bda15g00614 949 SMART LRR_typ_2 454 478 IPR003591 -
Bda15g00614 949 SMART LRR_typ_2 120 144 IPR003591 -
Bda15g00614 949 SMART LRR_typ_2 382 406 IPR003591 -
Bda15g00614 949 SMART LRR_typ_2 430 453 IPR003591 -
Bda15g00614 949 SMART LRR_typ_2 166 189 IPR003591 -
Bda15g00614 949 SMART LRR_typ_2 309 333 IPR003591 -
Bda15g00614 949 ProSiteProfiles Protein kinase domain profile. 824 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00614 - - - tcc:18604765 1249.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda15g00614 Bda-Chr15:9322600 Bda04g00364 Bda-Chr4:49930326 7.91E-110 dispersed
Bda15g00614 Bda-Chr15:9322600 Bda03g01111 Bda-Chr3:11359984 1.09E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70107 PF07714 PK_Tyr_Ser-Thr 2.10E-16 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00614 Bda_Chr15 FPKM 3.887619 0.0 2.998017 3.157288 2.973112 2.421816 0.0 3.295566 3.992974