Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00616 ATGAGTCAGTGTATTGTTCCGAATTGGAATCTGGGCTCCCAAAGACAAGAACAAGTCGAGCCAGAAGAAGGAAATAGATCCTCTCACGTGCACTCCTTGCAGACCCTCCACTCTGTTTCTTCTCACCTTGTCCCTATGTCTGAGTATGAAATTGCTGAGCTAACATGGGAAAATGGACAGTTAGCCATGCATGGGCTGGGTGGGCTACCTCCGTATCCCCCAACCAAACCAACATGGTGCCATCCAACTGACACTCTTGAGTCCATAGTCCGCCAAGCCGCCTTTCACAAACAAAGCACCACTCCGAACCACCAAGCCCAGGCCCAGACCCAAGTTTACGCCGGCTCGGCATCTCCTAGCCGTAAATGTGCCGAGAGCTCCTGGAGGGAGACGATGCGGCCGCCAATCGTAACAAAACGTGCACGGTCAGAGTCGGATTATGGTGGAAGAAATAACATTTGTTGTAGTAGTAGTAATAGGCCGGATCTGAGCAATTGTGCAAGCGCAAGTGCCACATTTTGCATGGACAATGACACTACTTTAATGACATGGACATCCTTTGAATCTCCCCAAAGTTTCAAGACGAAAACCACGGAAGACGATTCGACCTGGCACGGGGGATCGGAAAACCAGGAGGAAGACCGTGATATCAAGCGCGAAACGGGACGTTCAAACTCCACGAGACGAAGCCGAGCTGCTGCCGTACATAATCAATCCGAGAGGAAACGACGAGATAGGATTAATCAGAAGATGAAAGCTCTGCAAAAGTTGGTGCCTAATGCTTGTAAGACCGATAAAGCTTCGATGTTGGACGAGGTGATCGAATACCTAAAACAACTTCAAGCACAAGTCCAGTTGATGAGCATGAGAAATATTCCTCAGATGATCATGCCTCTAGGCATGCAGCAGCAGCTTCAAATGTCGATGATGGCTCGAATGGGCATGGGGCTCGGGCTCGGGCTCGGCAACATGGCTCGAACCACTCCTCAGCCCCTGACTCAGCTAGTTCATCCCACTCCCCAAGCATTCATTCAACCTCCGTTTATGATGCACCCAATGGTTCAGCCTCAACCGAAGCTGGATTCAGGAACTAATCCTCCAGTTCCTCTTCCCGATCCGTTCTGCGCCTACCTAGCACAATCGATGAATATGGATCTTTACAACAAGATGGCAGCGCTGTATCGCCAACAGGTGAATCCAAACACACAAACAGGTGGCAGTTCATCACAATCAAACAATGTACAAAGAAATTAG 1254 49.44 MSQCIVPNWNLGSQRQEQVEPEEGNRSSHVHSLQTLHSVSSHLVPMSEYEIAELTWENGQLAMHGLGGLPPYPPTKPTWCHPTDTLESIVRQAAFHKQSTTPNHQAQAQTQVYAGSASPSRKCAESSWRETMRPPIVTKRARSESDYGGRNNICCSSSNRPDLSNCASASATFCMDNDTTLMTWTSFESPQSFKTKTTEDDSTWHGGSENQEEDRDIKRETGRSNSTRRSRAAAVHNQSERKRRDRINQKMKALQKLVPNACKTDKASMLDEVIEYLKQLQAQVQLMSMRNIPQMIMPLGMQQQLQMSMMARMGMGLGLGLGNMARTTPQPLTQLVHPTPQAFIQPPFMMHPMVQPQPKLDSGTNPPVPLPDPFCAYLAQSMNMDLYNKMAALYRQQVNPNTQTGGSSSQSNNVQRN 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9335231 9337538 - Bda012459.1 Bda15g00616 22311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00616 417 SMART finulus 237 286 IPR011598 GO:0046983
Bda15g00616 417 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 292 IPR036638 GO:0046983
Bda15g00616 417 MobiDBLite consensus disorder prediction 10 31 - -
Bda15g00616 417 MobiDBLite consensus disorder prediction 190 246 - -
Bda15g00616 417 PANTHER TRANSCRIPTION FACTOR PIF7 3 413 - -
Bda15g00616 417 Pfam Helix-loop-helix DNA-binding domain 235 281 IPR011598 GO:0046983
Bda15g00616 417 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
Bda15g00616 417 Coils Coil 237 257 - -
Bda15g00616 417 CDD bHLH_AtPIF_like 231 291 - -
Bda15g00616 417 Gene3D - 226 291 IPR036638 GO:0046983
Bda15g00616 417 MobiDBLite consensus disorder prediction 194 226 - -
Bda15g00616 417 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 413 IPR031066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00616 - - - vvi:100262138 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01054 Bda-Chr3:10359728 Bda15g00616 Bda-Chr15:9335231 2.26E-45 dispersed
Bda08g01370 Bda-Chr8:54289614 Bda15g00616 Bda-Chr15:9335231 1.13E-26 dispersed
Bda12g01014 Bda-Chr12:41623108 Bda15g00616 Bda-Chr15:9335231 2.19E-23 dispersed
Bda15g00616 Bda-Chr15:9335231 Bda01g01945 Bda-Chr1:55838157 1.30E-17 dispersed
Bda15g00616 Bda-Chr15:9335231 Bda10g00468 Bda-Chr10:37643580 3.50E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g623 . . . Bda15g00616 . . . Bma12g00978 . . . . Car10g00201 . . . . . . . . . . . . . . . . . . . . . . Lsi02g00102 Csa01g00581 Chy12g01515 Cme12g01961 . Blo15g00325 . . Bpe07g00768 . . . . . . . . . . . Cpe18g00775 Bhi08g01118 . . . . . . Cla04g01172 Cam04g1229 Cec01g1740 Cco01g1786 Clacu04g1256 Cmu04g1235 Cre01g1530 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007472 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17193 PF00010 HLH 1.00E-13 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00616 Bda_Chr15 FPKM 0.364005 0.943847 0.0 0.0 0.0 0.0 0.0 0.0 0.0