Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00624 ATGGCAGAGACAGCGACACCTGGTGGAATTTTGACTATTCTGGCTAATCCATCGCCTGAATCTTTATCGGAAGTTCCAGATATAGTGGTTCAGGTCCTCGATCTCAAAGCTGCCGGCAATCGGTACATCTTTACCGCCAGCGATGGAAATATGAGGTTGAAAGCTATTCTGCCTTCAAATCTCACTTCTGATGTGATCTCAGGGAAGATTCAGAGCTTAGGTCTTATTCGTATTCTTGATTATTTCCTCAATGACATTCCAAATAAGTCCGACAAGTATTTGATTGTGACTAAATGCGAGGTTGTTTCTCCTGCTCTTAAAATGGAGATCAATAATATCGTCAAAAGTGAGGGATCTGAAACGTTACAGACATCGAAATTAGAAAATATCCGTGAGAGTGAAATGAAAGCAGAAAGGCCATGTATTCTTCTAAAGCCAAAGCCAGAAATTTATACCAAATCAGCTGCTCAAATTGTACAAGAACAAAGATCAAACATGCCCCCAACGGCACGAATGGCAATGACAAGGAGAGTTCATCCACTTCTTTCATTGAATCCTTACCAAGGCAATTGGACGATTAAAGTTCGTGTTACAAACAAGGAAGTTATGCGTAATTATAAGAACGCCAGGGGAGAAGGATGTCTCTTCAATGTGGAGTTAACTGACGATAACGAAACCCAAATTCAGGCAACGATGTTTAATGAAGCTGCAAGAAAGTTCTATGATAAGTTTGAGCTTGGAAAGGTTTATTACATTTCAAAGGGAACTCTCAAGGTTGCCAACAAGAGATTCAGTACAGTGAAAAATGATTATGAAATGACTCTAAATGAGAATTCAGAGGTGGAAGAGGTCGCCAATGAAGCTATTTTTGTGCCCGACACAAAATTCAGTTTTGTCCCAATCGACATGTTGGGTCCCTACGTGAATGGAAAAGAACTCGTAGATGTCATTGGAGTTGTTCAGAATGTTTCTTCTACGATGAGTATTCGAAGGAAGATCAATAATGAAACTGCTCCAAAGCGTGACATAACTATTGCTGATGAGACGAAAAAAACAATTGTGGTCTCTCTATGGAACGAGCTTGCAACTACTGTGGGACAGGAGTTGCTTGACAAAGCTGACCAATCGCCAGTCATCGCTATTAAATCTCTTAGAGTTGGAGATTTTCAAGGTGTATCTCTATCATCAGTGAGCAGAAGTAAATTGCTGGTAAATCCAGACATGCCTGAGGCAAGAAAGTTGAAATCCTGGTTTGATTCGGAAGGCAAAGGAACATCAATGGCGTCTGTTGGCTCTGGTTTGAGCCCATCATCCAAAAATGGAGTAAGGTCGATGTACACTGATCGGATGTCTCTGTCTCACATAATCCAAAACCCATCACTAGGGGATGATAAGCCAACATTCTTCAACACCAGAGCATACATCAGCTTCATCAAGCCTGACCAGGCAATGTGGTACAGAGCTTGCAAGACTTGCAACAAGAAGGTGACTGATGCCATAGGTTCTGGATTCTGGTGTGAAAATTGCCAGAAAAATGAGGAAGAATGCAGTTTAAGATATATTATGGTAGTTAGAGTTTCTGATGCCGGTGGTGAAGTCTATCTCTCTCTCTTCAATGAAGAGGCAGAAAAAATCATTGGGTGCTCAGCTGATGAGCTTGAACAAATGAAATCACAGATGGGTGAAGAGAATAATTCATATGAGATGAAACTGAAAGAGGCTACTTGGGTTCCTCATTTGCTGAGGATTAGCGTTTCTCAGAATGAATACAACAATGAGAAGAGGCAAAGGGTTACTGCCAAAGCAGTTGATGCTGTTGATTTTGCTTCTGAATCCAGATTTTTGCTTGAAGAAATATCAAAGATGAAGCTTTCAAGGTAA 1881 40.78 MAETATPGGILTILANPSPESLSEVPDIVVQVLDLKAAGNRYIFTASDGNMRLKAILPSNLTSDVISGKIQSLGLIRILDYFLNDIPNKSDKYLIVTKCEVVSPALKMEINNIVKSEGSETLQTSKLENIRESEMKAERPCILLKPKPEIYTKSAAQIVQEQRSNMPPTARMAMTRRVHPLLSLNPYQGNWTIKVRVTNKEVMRNYKNARGEGCLFNVELTDDNETQIQATMFNEAARKFYDKFELGKVYYISKGTLKVANKRFSTVKNDYEMTLNENSEVEEVANEAIFVPDTKFSFVPIDMLGPYVNGKELVDVIGVVQNVSSTMSIRRKINNETAPKRDITIADETKKTIVVSLWNELATTVGQELLDKADQSPVIAIKSLRVGDFQGVSLSSVSRSKLLVNPDMPEARKLKSWFDSEGKGTSMASVGSGLSPSSKNGVRSMYTDRMSLSHIIQNPSLGDDKPTFFNTRAYISFIKPDQAMWYRACKTCNKKVTDAIGSGFWCENCQKNEEECSLRYIMVVRVSDAGGEVYLSLFNEEAEKIIGCSADELEQMKSQMGEENNSYEMKLKEATWVPHLLRISVSQNEYNNEKRQRVTAKAVDAVDFASESRFLLEEISKMKLSR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9395060 9398217 + Bda012468.1 Bda15g00624 22319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00624 626 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Bda15g00624 626 Pfam Replication protein A OB domain 309 405 IPR031657 -
Bda15g00624 626 CDD RPA1_DBD_A 180 283 - -
Bda15g00624 626 PANTHER REPLICATION FACTOR A 1, RFA1 5 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda15g00624 626 SUPERFAMILY Nucleic acid-binding proteins 446 622 IPR012340 -
Bda15g00624 626 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bda15g00624 626 CDD RPA1_DBD_B 313 419 - -
Bda15g00624 626 Gene3D - 291 431 IPR012340 -
Bda15g00624 626 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bda15g00624 626 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 620 - -
Bda15g00624 626 CDD RPA1_DBD_C 463 621 IPR013955 -
Bda15g00624 626 Coils Coil 550 570 - -
Bda15g00624 626 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bda15g00624 626 Pfam Replication factor-A C terminal domain 468 615 IPR013955 -
Bda15g00624 626 SUPERFAMILY Nucleic acid-binding proteins 296 423 IPR012340 -
Bda15g00624 626 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Bda15g00624 626 Gene3D - 432 622 IPR012340 -
Bda15g00624 626 Gene3D - 5 116 IPR012340 -
Bda15g00624 626 Gene3D - 177 286 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda11g01026 Bda-Chr11:10001285 Bda15g00624 Bda-Chr15:9395060 3.46E-98 transposed
Bda15g00624 Bda-Chr15:9395060 Bda06g00521 Bda-Chr6:7478794 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00624 K07466 - csv:101208545 926.776