Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda15g00632 ATGCGGCGGCGGGCCGCCGAGTATCGGCGCCCGGCTAGAAGAAGGTTTTCGCCTTGGATCTGGGCACTTCTTGGGTTATTCTCAATTGCTGGAATTGTGTTGTTCATAGGTCACCATAACTATCATGAAGATCAAGTTAACCATCCTCCTATTGAGGAGAAAATTTCTCGTGTTGAACATCAGCTTCCTCGCAACAGATTAAATTTCACAGATGAATTATCGAGTGCCACCTCTTTTTCGAGGCAGTTGACGGAGCAAATGACCCTAGCCAAGGCTTATGTCATTATCGCTAAAGAGCACAACAACCTTCATCTCGCATGGAAATTGAGCTCGAAGATCAGAAGTTGCCAGCTTTTGTTGTCAAATGCAGTCACGAGGGGGGAGCCTATCACTATCAAAGAGGCCGAGCCAATAATGAAAAGCCTCTCTTCTCTCATATTTAAGGCACAAGATGCCCATTACGATCTCGCCACCACAATAATGACAATGAAATCTCACATTCAAGCCCTCGAAGGACGAGCCAGTGCCGCCATTGTTCAAAGCACGGTTTTTGGTCAGCTCGTAGTGGAGGCAATACCCAAGAGTTTATATTGCTTAAATGTCAAGCTCTTGGCCGATTGGATAAAAATGCCTTCGATCAGAGAACTTGCAGAGGAAAGGAGAAACTCTCCCCGCCTAGTCGATAACAATCTCTATCACTTCTGCATATTTTCCGATAATGTTCTTGCTGCTTCTGTTGTCATTAACTCAACTGTCTCTAATGCCGATCATCCGAAACAGATGGTCTTCCACATAGTCACAAATGGAGTTAACTATGGATCAATGCAGGCTTGGTTTCTTAGCAATGACTTCAAAGGTTACATGATAGAAGTTCAAAATATTGAGGACCTGCCTTGGCTGAATTCTTCTTTTTCCTCTGTTGCTAATTCGGAGTCTACTTTCGGGGGGAATCGAGATGCAAAGGTTAAAGCGAAGATTCGTGACTTGGAATACTTGTTTTTGCTAAACCATCTTCGATTTTACATTCCAGAGATTTATCCGCAGTTAGAGAAGATTGTTTTTTTGGAAGATGACGTCGTCGTCCAAAAGGATCTGACCCCACTTTTTTTGCTCGATTTGCACGGAAATGTTAATGGCGCAGTTGAAACCTGTCTCGAGGCATATCATCGATTTTACAAGTATCTAAATTTCTCTAACTCGATCCTTAGCTCAAAGTTCGATCCACAATCGTGTGGATGGGCGTTTGGATTGAATGTCTTTGATTTGGTGGCATGGAGGAATGCTGATGTGACTGCTAGGTACCATTACTGGCTCGAACAGAATGAAGATCGAACTCTATGGAAACTCGGGTGTCTTCCTCCTGCTCTCCTTACGTTCTATGGCCTAACAGAACCGCTTGATAGAAGATGGCATGTTTTGGGTTTGGGTTATGATCCAAATATTGACAACCGTTTGATCGAAAGTGGGGCCGTGATTCACTTCAACGGAAACATGAAGCCATGGCTACGATTGGCGATTGGCAGGTACAAGCCGCTATGGGACCGGTATTTAAATCAAAGCCATAGATATATCCAAGATTGCATCACAGTTTAG 1593 43.88 MRRRAAEYRRPARRRFSPWIWALLGLFSIAGIVLFIGHHNYHEDQVNHPPIEEKISRVEHQLPRNRLNFTDELSSATSFSRQLTEQMTLAKAYVIIAKEHNNLHLAWKLSSKIRSCQLLLSNAVTRGEPITIKEAEPIMKSLSSLIFKAQDAHYDLATTIMTMKSHIQALEGRASAAIVQSTVFGQLVVEAIPKSLYCLNVKLLADWIKMPSIRELAEERRNSPRLVDNNLYHFCIFSDNVLAASVVINSTVSNADHPKQMVFHIVTNGVNYGSMQAWFLSNDFKGYMIEVQNIEDLPWLNSSFSSVANSESTFGGNRDAKVKAKIRDLEYLFLLNHLRFYIPEIYPQLEKIVFLEDDVVVQKDLTPLFLLDLHGNVNGAVETCLEAYHRFYKYLNFSNSILSSKFDPQSCGWAFGLNVFDLVAWRNADVTARYHYWLEQNEDRTLWKLGCLPPALLTFYGLTEPLDRRWHVLGLGYDPNIDNRLIESGAVIHFNGNMKPWLRLAIGRYKPLWDRYLNQSHRYIQDCITV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9462692 9466114 + Bda012476.1 Bda15g00632 22327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda15g00632 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 525 IPR029044 -
Bda15g00632 530 Pfam Glycosyl transferase family 8 235 504 IPR002495 GO:0016757
Bda15g00632 530 CDD GT8_like_1 232 518 - -
Bda15g00632 530 PANTHER HEXOSYLTRANSFERASE 3 528 - -
Bda15g00632 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 528 IPR029044 -
Bda15g00632 530 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 528 IPR029993 GO:0047262
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda15g00632 K13648 GAUT; alpha-1,4-galacturonosyltransferase [EC:2.4.1.43] - jre:109010078 832.017
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda14g00893 Bda15g00632 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda13g00646 Bda-Chr13:7468716 Bda15g00632 Bda-Chr15:9462692 0 dispersed
Bda15g00632 Bda-Chr15:9462692 Bda08g00222 Bda-Chr8:2050927 1.92E-141 dispersed
Bda14g00893 Bda-Chr14:6928356 Bda15g00632 Bda-Chr15:9462692 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g434 Blo04g00801 . . Bda15g00632 Bpe12g00516 . . . . . Cma10g00285 Cma11g00225 Car10g00267 Car11g00201 Sed08g0293 . Cpe04g01446 Bhi02g00071 Tan09g2011 Cmetu02g0626 . Hepe09g0290 . . Cla06g01525 Cam06g1682 Cec06g1744 Cco06g1742 Clacu06g1649 Cmu06g1596 Cre06g2407 Cone2ag0791 . Cone13ag0025 Cone19ag0034 . . . . . . . Bda14g00893 . Bpe15g00565 . . . Cmo10g00302 Cmo11g00228 . . . . . Cpe18g00717 . . . . . . . . . . . . . . Lsi06g01394 Csa01g00336 Chy02g02406 Cme02g01808
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005747 2 1 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda15g00632 Bda_Chr15 FPKM 0.0 0.863695 0.0 0.0 0.281666 0.0 0.0 0.0 0.174651